Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alginate lyaseSAMN05428988_6128Not AvailableNegative7423491 - 742467245293.5
alpha-d-xyloside xylohydrolaseSAMN05428988_6129Not AvailableNegative7424642 - 742684682595.1
spoiid/lytb domain protein/por secretion system c-terminal sorting domain-containing proteinSAMN05428988_6130Not AvailableNegative7426974 - 7429832102314.0
fibronectin type iii domain-containing proteinSAMN05428988_6131Not AvailableNegative7430214 - 743201663820.2
por secretion system c-terminal sorting domain-containing proteinSAMN05428988_6132Not AvailablePositive7432419 - 7435520110077.0
camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinasesSAMN05428988_6133Not AvailablePositive7435695 - 743627322309.6
nucleoside-diphosphate-sugar epimeraseSAMN05428988_6134Not AvailablePositive7436351 - 743723831792.9
hypothetical proteinSAMN05428988_6135Not AvailablePositive7437549 - 74378129545.72
nudix domain-containing proteinSAMN05428988_6136Not AvailablePositive7437880 - 743828415329.4
hypothetical proteinSAMN05428988_6137Not AvailablePositive7438365 - 743928837196.3

Displaying genes 6071 – 6080 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.