Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
vitamin b12 transporterSAMN05428988_5235Not AvailablePositive6318895 - 632129187945.6
outer membrane transport energization protein exbbSAMN05428988_5236Not AvailablePositive6321302 - 632183519729.1
hypothetical proteinSAMN05428988_5237Not AvailablePositive6321844 - 632218212673.4
cobaltochelatase cobn subunitSAMN05428988_5238Not AvailablePositive6322189 - 6326184149437.0
concanavalin a-like lectin/glucanases superfamily proteinSAMN05428988_5241Not AvailableNegative6327470 - 632955477923.7
hypothetical proteinSAMN05428988_5242Not AvailablePositive6330359 - 633100924350.2
glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-n-acetylglucosamine synthaseSAMN05428988_5243Not AvailableNegative6331132 - 633231945121.6
suppressor of fused protein (sufu)SAMN05428988_5244Not AvailablePositive6332667 - 633332024868.3
ragb/susd domain-containing proteinSAMN05428988_5245Not AvailableNegative6333765 - 633507247500.5
tonb-linked outer membrane protein, susc/raga familySAMN05428988_5246Not AvailableNegative6335093 - 6338089107475.0

Displaying genes 5191 – 5200 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.