Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fecr family proteinSAMN05428988_5192Not AvailablePositive6250908 - 625203841615.2
tonb-linked outer membrane protein, susc/raga familySAMN05428988_5193Not AvailablePositive6252272 - 6255778127478.0
ragb/susd domain-containing proteinSAMN05428988_5194Not AvailablePositive6255797 - 625720352018.8
ahpc/tsa family proteinSAMN05428988_5195Not AvailablePositive6257237 - 625844545722.6
peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domainsSAMN05428988_5196Not AvailablePositive6258679 - 625981244820.0
histidine kinaseSAMN05428988_5197Not AvailablePositive6259809 - 626083440635.4
two component transcriptional regulator, lyttr familySAMN05428988_5198Not AvailablePositive6260831 - 626153827399.6
serine protease, subtilisin familySAMN05428988_5199Not AvailableNegative6261540 - 626303952653.9
gtpase, g3e familySAMN05428988_5200Not AvailablePositive6263193 - 626439545707.1
rna polymerase sigma-70 factor, ecf subfamilySAMN05428988_5201Not AvailablePositive6264488 - 626509924063.1

Displaying genes 5151 – 5160 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.