Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized conserved protein ybap, trab familySAMN05428988_3605Not AvailablePositive4189700 - 4193329137495.0
membrane protease subunit, stomatin/prohibitin family, contains c-terminal zn-ribbon domainSAMN05428988_3606Not AvailablePositive4193456 - 419457140360.4
zinc finger domain-containing protein, lsd1 subclassSAMN05428988_3607Not AvailablePositive4194575 - 419568741765.1
pap2 superfamily proteinSAMN05428988_3608Not AvailablePositive4195850 - 419719948996.4
hypothetical proteinSAMN05428988_3609Not AvailableNegative4197233 - 419799129617.1
hypothetical proteinSAMN05428988_3610Not AvailableNegative4197972 - 419843917942.6
uncharacterized membrane proteinSAMN05428988_3611Not AvailableNegative4198426 - 419908225500.3
signal transduction histidine kinaseSAMN05428988_3612Not AvailableNegative4199282 - 420060750557.8
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN05428988_3613Not AvailableNegative4200610 - 420128425779.2
hypothetical proteinSAMN05428988_3614Not AvailableNegative4201290 - 420215331514.6

Displaying genes 3581 – 3590 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.