Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative collagen-binding domain of a collagenaseSAMN05428988_3302Not AvailablePositive3828362 - 382970250771.7
glycosyl hydrolases family 32 n-terminal domain-containing proteinSAMN05428988_3303Not AvailablePositive3829706 - 383061434989.9
tonb-linked outer membrane protein, susc/raga familySAMN05428988_3304Not AvailablePositive3830587 - 3833349101298.0
starch-binding associating with outer membraneSAMN05428988_3305Not AvailablePositive3833361 - 383505564404.0
bnr repeat-like domain-containing proteinSAMN05428988_3306Not AvailablePositive3835039 - 383676364627.7
alpha-l-rhamnosidaseSAMN05428988_3307Not AvailablePositive3836760 - 3840431137601.0
sugar phosphate isomerase/epimeraseSAMN05428988_3308Not AvailablePositive3840410 - 384130332765.9
alpha-l-rhamnosidaseSAMN05428988_3309Not AvailablePositive3841328 - 3845413153165.0
beta-galactosidaseSAMN05428988_3310Not AvailablePositive3845410 - 384770186347.1
alpha-l-rhamnosidase n-terminal domain-containing proteinSAMN05428988_3311Not AvailablePositive3847756 - 3850476102325.0

Displaying genes 3281 – 3290 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.