Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysophospholipase l1SAMN05428988_2597Not AvailablePositive3024188 - 302557950934.3
gdsl-like lipase/acylhydrolaseSAMN05428988_2598Not AvailablePositive3025554 - 302678345194.3
d-alanyl-lipoteichoic acid acyltransferase dltb, mboat superfamilySAMN05428988_2599Not AvailablePositive3026780 - 302826757683.8
hypothetical proteinSAMN05428988_2600Not AvailablePositive3028432 - 302973049549.1
two-component system, ompr family, phosphate regulon sensor histidine kinase phorSAMN05428988_2601Not AvailableNegative3029734 - 303078039974.5
two-component system, ompr family, alkaline phosphatase synthesis response regulator phopSAMN05428988_2602Not AvailableNegative3030895 - 303157825871.0
uncharacterized membrane proteinSAMN05428988_2603Not AvailableNegative3031726 - 303247528904.1
hypothetical proteinSAMN05428988_2604Not AvailablePositive3032821 - 303502283070.4
atp-binding cassette, subfamily bSAMN05428988_2605Not AvailablePositive3035293 - 303705666557.2
atp synthase f0 subcomplex a subunitSAMN05428988_2606Not AvailablePositive3037181 - 303834442690.9

Displaying genes 2581 – 2590 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.