Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulator glxa family, contains an amidase domain and an arac-type dna-binding hth domainSAMN05428988_0209Not AvailableNegative223493 - 22447636239.0
phnb proteinSAMN05428988_0210Not AvailablePositive224602 - 22500314997.8
hypothetical proteinSAMN05428988_0211Not AvailableNegative225199 - 22620636207.3
c-terminal processing protease ctpa/prc, contains a pdz domainSAMN05428988_0212Not AvailableNegative226303 - 229494119219.0
hypothetical proteinSAMN05428988_0213Not AvailablePositive229549 - 2296804609.76
amino acid/polyamine/organocation transporter, apc superfamilySAMN05428988_0214Not AvailablePositive229725 - 23120353274.4
amino acid/polyamine/organocation transporter, apc superfamilySAMN05428988_0215Not AvailableNegative231246 - 23270052314.4
putative s-adenosyl-l-methionine-dependent methyltransferaseSAMN05428988_0216Not AvailableNegative232778 - 23439761381.5
hypothetical proteinSAMN05428988_0217Not AvailableNegative234437 - 23578349905.3
transcriptional regulator, hxlr familySAMN05428988_0218Not AvailableNegative236014 - 23637013776.9

Displaying genes 241 – 250 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.