Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioredoxinSAMN05428988_0189Not AvailablePositive197513 - 19806120625.9
efflux transporter, outer membrane factor (omf) lipoprotein, nodt familySAMN05428988_0190Not AvailableNegative198252 - 19965850594.9
hydrophobic/amphiphilic exporter-1, hae1 familySAMN05428988_0191Not AvailableNegative199685 - 202837114869.0
membrane fusion protein, multidrug efflux systemSAMN05428988_0192Not AvailableNegative202941 - 20412542906.7
arac-type dna-binding proteinSAMN05428988_0193Not AvailableNegative204459 - 20534333781.9
dna-binding transcriptional regulator, marr familySAMN05428988_0194Not AvailableNegative205586 - 20602016761.4
dna mismatch repair protein muts2SAMN05428988_0195Not AvailableNegative206297 - 20841180672.3
peptide-methionine (s)-s-oxide reductaseSAMN05428988_0196Not AvailablePositive208596 - 20925224791.0
hypothetical proteinSAMN05428988_0197Not AvailablePositive209481 - 21016726685.3
gdsl-like lipase/acylhydrolase family proteinSAMN05428988_0198Not AvailablePositive210186 - 21121138569.6

Displaying genes 221 – 230 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.