Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane fusion protein, multidrug efflux systemSAMN05428988_1816Not AvailablePositive2120771 - 212185038964.6
multidrug efflux pumpSAMN05428988_1817Not AvailablePositive2121850 - 2124963114615.0
outer membrane protein tolcSAMN05428988_1818Not AvailablePositive2124977 - 212629049440.8
carboxypepd_reg-like domain-containing proteinSAMN05428988_1819Not AvailableNegative2126372 - 212712729180.1
ribose-phosphate pyrophosphokinaseSAMN05428988_1820Not AvailablePositive2127254 - 212816833548.7
predicted n-acyltransferase, gnat familySAMN05428988_1821Not AvailablePositive2128241 - 212867516515.9
tonb-linked outer membrane protein, susc/raga familySAMN05428988_1822Not AvailablePositive2128817 - 2132335127979.0
starch-binding associating with outer membraneSAMN05428988_1823Not AvailablePositive2132347 - 213381953856.6
protein of unknown functionSAMN05428988_1824Not AvailablePositive2133915 - 213463728271.9
ycxb-like proteinSAMN05428988_1825Not AvailableNegative2134776 - 213525518362.3

Displaying genes 1801 – 1810 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.