Chitinophaga sp. YR573

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. YR573 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which indicates a streamlined genetic structure often associated with specific ecological niches. The strain is cataloged under the accession number FOJF00000000.1, providing a basis for its genomic and taxonomic identification. As a member of the Chitinophaga genus, this bacterium is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The ability to metabolize chitin is ecologically significant, as it contributes to nutrient cycling in various environments, particularly in soil and aquatic systems where chitinous materials may accumulate. Understanding the traits of Chitinophaga sp. YR573 furthers our knowledge of microbial diversity and the functional roles these organisms play in their ecosystems. Their capacity to break down complex polysaccharides like chitin can influence soil health, organic matter decomposition, and the overall dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. YR573
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. YR573 genome assembly, contig: Ga0115458_18,

Gene Summary

Adenine Count

2341778 bp

Thymine Count

2306990 bp

Guanine Count

1725057 bp

Cytosine Count

1692305 bp

Genome Length

8066695 bp

Protein-coding Genes

6441 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chey chemotaxis protein or a chey-like rec (receiver) domainSAMN05428988_1562Not AvailablePositive1832802 - 183366831918.6
putative sigma-54 modulation proteinSAMN05428988_1563Not AvailableNegative1833714 - 183409414150.8
por secretion system c-terminal sorting domain-containing proteinSAMN05428988_1564Not AvailablePositive1834322 - 183675787262.1
right handed beta helix regionSAMN05428988_1565Not AvailablePositive1836922 - 183780929728.4
ankyrin repeatSAMN05428988_1566Not AvailableNegative1837926 - 183876230664.0
hypothetical proteinSAMN05428988_1567Not AvailableNegative1838830 - 183934519371.7
alpha-1,2-mannosidase, putativeSAMN05428988_1568Not AvailableNegative1839348 - 184159483813.1
phosphoinositide phospholipase c, ca2+-dependentSAMN05428988_1569Not AvailableNegative1841603 - 184265539564.2
starch-binding associating with outer membraneSAMN05428988_1570Not AvailableNegative1842719 - 184431159484.0
iron complex outermembrane recepter proteinSAMN05428988_1571Not AvailableNegative1844332 - 1847322108776.0

Displaying genes 1551 – 1560 of 6541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.