Devosia sp. YR412

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Devosia

Description

Devosia sp. YR412 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for having a single replicon, which is indicative of its genomic structure and organization. The reference accession number for Devosia sp. YR412 is FOFL00000000.1, allowing for further exploration and verification of its genetic information. The classification of Devosia sp. YR412 within the broader context of microbial ecology highlights its potential role in various environments. Gram-negative bacteria are often associated with diverse metabolic capabilities and interactions with other microorganisms. This trait may suggest that Devosia sp. YR412 could be involved in biogeochemical processes, particularly in the cycling of nutrients in its habitat. Understanding the specific ecological roles of such bacteria is crucial for comprehending their impact on environmental health and stability. The single replicon may influence its adaptability and evolutionary strategies, providing insights into how this organism survives and thrives in its ecological niche. Overall, the traits of Devosia sp. YR412 point towards its significance within microbial communities, warranting further investigation into its functional roles and contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusDevosia
SpeciesDevosia sp. YR412
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatPopulus root and rhizosphere microbial communities
Biotic relationshipNot Available
Host(s)Populus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Devosia sp. YR412 genome assembly, contig: Ga0115460_111, whole

Gene Summary

Adenine Count

723195 bp

Thymine Count

712583 bp

Guanine Count

1175938 bp

Cytosine Count

1219499 bp

Genome Length

3831215 bp

Protein-coding Genes

3687 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carbohydrate abc transporter membrane protein 2, cut1 familySAMN05428969_0470Not AvailablePositive478301 - 47923334407.2
carbohydrate abc transporter substrate-binding protein, cut1 familySAMN05428969_0471Not AvailablePositive479366 - 48058943659.6
carbohydrate abc transporter atp-binding protein, cut1 familySAMN05428969_0472Not AvailablePositive480658 - 48173439060.7
transcriptional regulator, rpir familySAMN05428969_0473Not AvailablePositive481943 - 48280930862.9
hexosaminidaseSAMN05428969_0474Not AvailablePositive483064 - 48507672474.7
microcystin degradation protein mlrc, contains duf1485 domainSAMN05428969_0475Not AvailableNegative485283 - 48674052561.0
reactive intermediate/imine deaminaseSAMN05428969_0476Not AvailablePositive486953 - 48733913963.8
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05428969_0477Not AvailablePositive487336 - 48810926512.6
d-serine deaminase, pyridoxal phosphate-dependentSAMN05428969_0478Not AvailablePositive488106 - 48917037200.6
dna-3-methyladenine glycosylaseSAMN05428969_0479Not AvailablePositive489180 - 48973419982.2

Displaying genes 471 – 480 of 3743 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.