Devosia sp. YR412

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Devosia

Description

Devosia sp. YR412 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for having a single replicon, which is indicative of its genomic structure and organization. The reference accession number for Devosia sp. YR412 is FOFL00000000.1, allowing for further exploration and verification of its genetic information. The classification of Devosia sp. YR412 within the broader context of microbial ecology highlights its potential role in various environments. Gram-negative bacteria are often associated with diverse metabolic capabilities and interactions with other microorganisms. This trait may suggest that Devosia sp. YR412 could be involved in biogeochemical processes, particularly in the cycling of nutrients in its habitat. Understanding the specific ecological roles of such bacteria is crucial for comprehending their impact on environmental health and stability. The single replicon may influence its adaptability and evolutionary strategies, providing insights into how this organism survives and thrives in its ecological niche. Overall, the traits of Devosia sp. YR412 point towards its significance within microbial communities, warranting further investigation into its functional roles and contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusDevosia
SpeciesDevosia sp. YR412
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatPopulus root and rhizosphere microbial communities
Biotic relationshipNot Available
Host(s)Populus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Devosia sp. YR412 genome assembly, contig: Ga0115460_111, whole

Gene Summary

Adenine Count

723195 bp

Thymine Count

712583 bp

Guanine Count

1175938 bp

Cytosine Count

1219499 bp

Genome Length

3831215 bp

Protein-coding Genes

3687 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
allantoinaseSAMN05428969_3746Not AvailablePositive3801109 - 380246148003.3
abc-type dipeptide/oligopeptide/nickel transport system, atpase componentSAMN05428969_3747Not AvailableNegative3802458 - 380305421516.0
peptide/nickel transport system atp-binding proteinSAMN05428969_3748Not AvailableNegative3803047 - 380382627524.2
peptide/nickel transport system permease proteinSAMN05428969_3749Not AvailableNegative3803826 - 380468931052.0
peptide/nickel transport system permease proteinSAMN05428969_3750Not AvailableNegative3804686 - 380567235086.9
peptide/nickel transport system substrate-binding proteinSAMN05428969_3751Not AvailableNegative3805675 - 380725256372.2
transcriptional regulator, copg familySAMN05428969_3752Not AvailablePositive3807370 - 380780715913.7
choline dehydrogenaseSAMN05428969_3753Not AvailableNegative3807804 - 380942058061.3
hypothetical proteinSAMN05428969_3754Not AvailablePositive3809737 - 38098875175.27
dna topoisomerase iv subunit aSAMN05428969_3755Not AvailablePositive3810183 - 381245383771.6

Displaying genes 3711 – 3720 of 3743 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.