Devosia sp. YR412

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Devosia

Description

Devosia sp. YR412 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for having a single replicon, which is indicative of its genomic structure and organization. The reference accession number for Devosia sp. YR412 is FOFL00000000.1, allowing for further exploration and verification of its genetic information. The classification of Devosia sp. YR412 within the broader context of microbial ecology highlights its potential role in various environments. Gram-negative bacteria are often associated with diverse metabolic capabilities and interactions with other microorganisms. This trait may suggest that Devosia sp. YR412 could be involved in biogeochemical processes, particularly in the cycling of nutrients in its habitat. Understanding the specific ecological roles of such bacteria is crucial for comprehending their impact on environmental health and stability. The single replicon may influence its adaptability and evolutionary strategies, providing insights into how this organism survives and thrives in its ecological niche. Overall, the traits of Devosia sp. YR412 point towards its significance within microbial communities, warranting further investigation into its functional roles and contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusDevosia
SpeciesDevosia sp. YR412
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatPopulus root and rhizosphere microbial communities
Biotic relationshipNot Available
Host(s)Populus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Devosia sp. YR412 genome assembly, contig: Ga0115460_111, whole

Gene Summary

Adenine Count

723195 bp

Thymine Count

712583 bp

Guanine Count

1175938 bp

Cytosine Count

1219499 bp

Genome Length

3831215 bp

Protein-coding Genes

3687 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plasmid stabilization system protein pareSAMN05428969_2588Not AvailablePositive2619602 - 261989210640.9
disulfide bond formation protein dsbbSAMN05428969_2589Not AvailableNegative2619889 - 262039818235.7
uncharacterized conserved protein yece, duf72 familySAMN05428969_2590Not AvailableNegative2620478 - 262131430200.9
peptide/nickel transport system atp-binding proteinSAMN05428969_2591Not AvailableNegative2621388 - 262223330617.0
peptide/nickel transport system atp-binding proteinSAMN05428969_2592Not AvailableNegative2622230 - 262325837663.7
peptide/nickel transport system permease proteinSAMN05428969_2593Not AvailableNegative2623260 - 262411731898.9
peptide/nickel transport system permease proteinSAMN05428969_2594Not AvailableNegative2624122 - 262512635968.7
peptide/nickel transport system substrate-binding proteinSAMN05428969_2595Not AvailableNegative2625196 - 262709470163.8
xylan 1,4-beta-xylosidaseSAMN05428969_2596Not AvailablePositive2627457 - 262906160173.6
transcriptional regulator, gntr familySAMN05428969_2597Not AvailableNegative2629318 - 262997724860.1

Displaying genes 2571 – 2580 of 3743 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.