Sphingopyxis sp. EG6

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. EG6 is characterized as a rod-shaped bacterium. It possesses two replicons, indicating a complex genomic structure likely contributing to its adaptability and metabolic versatility. The organism is cataloged under two specific accessions: NZ_AP017604.1 and NZ_AP017603.1, which provide genetic and genomic information pertinent to this strain. The rod shape of Sphingopyxis sp. EG6 is typical of many members within the Sphingopyxis genus, which are known for their diverse ecological roles, particularly in the degradation of various organic compounds. This morphological feature may facilitate its motility and nutrient uptake in its environment. The possession of two replicons is noteworthy, as it suggests a potential for enhanced gene regulation and the presence of plasmids, which could play a role in the organism's adaptability to different environmental conditions. This trait may be significant in bioremediation contexts where Sphingopyxis species are often employed to break down pollutants. In summary, Sphingopyxis sp. EG6, with its rod shape and dual-replicon structure, exemplifies a bacterial organism that may be well-suited for diverse ecological niches, particularly in environments where organic degradation is critical. Its genomic characteristics may enhance its functional capabilities, making it an interesting subject for further research in microbial ecology and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. EG6
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. EG6 chromosome, complete genome.

Gene Summary

Adenine Count

681162 bp

Thymine Count

679369 bp

Guanine Count

1239547 bp

Cytosine Count

1248253 bp

Genome Length

3848331 bp

Protein-coding Genes

3688 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
p-type conjugative transfer atpase trbbSPYCW_RS03760Not AvailablePositive777271 - 77826634891.1
trbc/virb2 family proteinSPYCW_RS03765Not AvailablePositive778263 - 77859511465.4
virb3 family type iv secretion system proteinSPYCW_RS03770Not AvailablePositive778595 - 7788739819.25
conjugal transfer protein trbeSPYCW_RS03775Not AvailablePositive778886 - 78132488819.8
p-type conjugative transfer protein trbjSPYCW_RS03780Not AvailablePositive781327 - 78209427314.7
putative entry exclusion protein trbk-altSPYCW_RS03785Not AvailablePositive782115 - 78239310028.0
p-type conjugative transfer protein trblSPYCW_RS03790Not AvailablePositive782397 - 78376144743.1
conjugal transfer protein trbfSPYCW_RS03795Not AvailablePositive783758 - 78444725634.5
p-type conjugative transfer protein trbgSPYCW_RS03800Not AvailablePositive784444 - 78540034129.8
trbi/virb10 family proteinSPYCW_RS03805Not AvailablePositive785397 - 78654540552.3

Displaying genes 791 – 800 of 3795 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.