Sphingopyxis sp. EG6

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. EG6 is characterized as a rod-shaped bacterium. It possesses two replicons, indicating a complex genomic structure likely contributing to its adaptability and metabolic versatility. The organism is cataloged under two specific accessions: NZ_AP017604.1 and NZ_AP017603.1, which provide genetic and genomic information pertinent to this strain. The rod shape of Sphingopyxis sp. EG6 is typical of many members within the Sphingopyxis genus, which are known for their diverse ecological roles, particularly in the degradation of various organic compounds. This morphological feature may facilitate its motility and nutrient uptake in its environment. The possession of two replicons is noteworthy, as it suggests a potential for enhanced gene regulation and the presence of plasmids, which could play a role in the organism's adaptability to different environmental conditions. This trait may be significant in bioremediation contexts where Sphingopyxis species are often employed to break down pollutants. In summary, Sphingopyxis sp. EG6, with its rod shape and dual-replicon structure, exemplifies a bacterial organism that may be well-suited for diverse ecological niches, particularly in environments where organic degradation is critical. Its genomic characteristics may enhance its functional capabilities, making it an interesting subject for further research in microbial ecology and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. EG6
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. EG6 chromosome, complete genome.

Gene Summary

Adenine Count

681162 bp

Thymine Count

679369 bp

Guanine Count

1239547 bp

Cytosine Count

1248253 bp

Genome Length

3848331 bp

Protein-coding Genes

3688 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide-methionine (s)-s-oxide reductase msraSPYCW_RS02280Not AvailableNegative459008 - 45954419410.5
m48 family metallopeptidaseSPYCW_RS02285Not AvailableNegative459600 - 46059234206.7
cox15/ctaa family proteinSPYCW_RS02290Not AvailablePositive460697 - 46174637901.0
hypothetical proteinSPYCW_RS02295Not AvailablePositive461743 - 46254027933.4
50s ribosomal protein l13SPYCW_RS02300Not AvailablePositive462707 - 46318617482.3
30s ribosomal protein s9SPYCW_RS02305Not AvailablePositive463186 - 46368317812.5
hypothetical proteinSPYCW_RS02310Not AvailablePositive463882 - 46506340653.8
autotransporter domain-containing proteinSPYCW_RS02315Not AvailablePositive465026 - 46738680205.7
pepsy domain-containing proteinSPYCW_RS02320Not AvailablePositive467468 - 46807622101.4
phosphotransferase family proteinSPYCW_RS02325Not AvailableNegative468086 - 46912637326.4

Displaying genes 491 – 500 of 3795 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.