Xenorhabdus eapokensis str. DL20

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus eapokensis strain DL20 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility capabilities. This strain possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation in its environment. The genomic data for this strain is cataloged under the accession number MKGQ00000000.1, providing a reference point for further genomic and phylogenetic studies. As a member of the Xenorhabdus genus, this bacterium is likely to be associated with entomopathogenic nematodes, which are known to play a role in biocontrol by infecting insect hosts. The motility conferred by flagella may enhance its ability to navigate through soil or other substrates to locate these nematodes or to find hosts for infection. Understanding the traits of Xenorhabdus eapokensis str. DL20 can provide insights into its ecological role, particularly in soil ecosystems where it may contribute to the natural regulation of insect populations. This bacterium's ability to move efficiently and replicate swiftly in favorable conditions may enhance its effectiveness as a biocontrol agent, making it a subject of interest for research in sustainable agriculture and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus eapokensis
StrainDL20

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xenorhabdus eapokensis strain DL20 Xedl_212, whole genome shotgun

Gene Summary

Adenine Count

1195704 bp

Thymine Count

1201814 bp

Guanine Count

931026 bp

Cytosine Count

914106 bp

Genome Length

4246750 bp

Protein-coding Genes

3533 genes

Non-Coding Genes

417 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l33Xedl_03090Not AvailablePositive3396167 - 33963346397.02
lipopolysaccharide biosynthesis proteinXedl_03091Not AvailablePositive3396497 - 339761541855.9
lipopolysaccharide heptosyltransferase iiXedl_03092Not AvailablePositive3397803 - 339879237778.4
alpha 1,2 n-acetylglucosamine transferaseXedl_03093Not AvailablePositive3398809 - 339993041456.1
putative glycosyltransferase wbphXedl_03094Not AvailablePositive3399911 - 340108644806.1
formamidopyrimidine-dna glycosylaseXedl_03095Not AvailablePositive3401198 - 340200730420.0
lipopolysaccharide core biosynthesis proteinXedl_03096Not AvailableNegative3402048 - 340253018114.9
udp-glucose--lipooligosaccharide glucosyltransferaseXedl_03097Not AvailableNegative3402496 - 340330531049.2
three-deoxy-d-manno-octulosonic-acid transferase domain proteinXedl_03098Not AvailableNegative3403305 - 340458247477.3
general glycosylation pathway proteinXedl_03099Not AvailableNegative3404687 - 340579041507.7

Displaying genes 3191 – 3200 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.