Xenorhabdus eapokensis str. DL20

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus eapokensis strain DL20 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility capabilities. This strain possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation in its environment. The genomic data for this strain is cataloged under the accession number MKGQ00000000.1, providing a reference point for further genomic and phylogenetic studies. As a member of the Xenorhabdus genus, this bacterium is likely to be associated with entomopathogenic nematodes, which are known to play a role in biocontrol by infecting insect hosts. The motility conferred by flagella may enhance its ability to navigate through soil or other substrates to locate these nematodes or to find hosts for infection. Understanding the traits of Xenorhabdus eapokensis str. DL20 can provide insights into its ecological role, particularly in soil ecosystems where it may contribute to the natural regulation of insect populations. This bacterium's ability to move efficiently and replicate swiftly in favorable conditions may enhance its effectiveness as a biocontrol agent, making it a subject of interest for research in sustainable agriculture and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus eapokensis
StrainDL20

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xenorhabdus eapokensis strain DL20 Xedl_212, whole genome shotgun

Gene Summary

Adenine Count

1195704 bp

Thymine Count

1201814 bp

Guanine Count

931026 bp

Cytosine Count

914106 bp

Genome Length

4246750 bp

Protein-coding Genes

3533 genes

Non-Coding Genes

417 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional 3-hydroxacyl-coa dehydrogenase/acyl-coa-binding proteinXedl_01623Not AvailablePositive1763176 - 176394927641.3
2-acetyl-coa isomeraseXedl_01624Not AvailablePositive1763953 - 176475028780.5
putative 3-hydroxyacyl-coa dehydrogenaseXedl_01625Not AvailablePositive1764753 - 176637259549.5
phenylacetic acid degradation protein paadXedl_01626Not AvailablePositive1766375 - 176685117358.5
acetyl-coa acetyltransferase fadaXedl_01627Not AvailablePositive1766854 - 176806842675.5
phenylacetate-coa ligaseXedl_01628Not AvailablePositive1768207 - 176954150088.0
phenylacetic acid degradation operon negative regulatory protein paaxXedl_01629Not AvailablePositive1769710 - 177065136347.6
cat encodes chloramphenicol acetyltransferaseXedl_01630Not AvailablePositive1770648 - 17708337061.24
dihydrofolate reductaseXedl_01631Not AvailablePositive1770987 - 177152619609.6
pts system, beta-glucoside-specific iiabc componentXedl_01632Not AvailablePositive1771791 - 177322451938.5

Displaying genes 1911 – 1920 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.