Chitinophagaceae bacterium

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Description

The Chitinophagaceae bacterium is characterized by having eight replicons, which suggests a complex genomic structure that may contribute to its adaptability and survival in various environments. The organism's genetic material is represented by several accession numbers, including SEAH00000000.1, SDZV00000000.1, SEAA00000000.1, SDZZ00000000.1, SEAC00000000.1, SEAD00000000.1, SEAJ00000000.1, and SEAK00000000.1. These accession numbers indicate that the bacterium has been the subject of genomic sequencing, allowing for the exploration of its genetic characteristics. The presence of multiple replicons in Chitinophagaceae suggests a potential for horizontal gene transfer and a diverse metabolic capacity, which may enable it to thrive in various ecological niches. Bacteria within the Chitinophagaceae family are often associated with chitin degradation, which plays a significant role in nutrient cycling within ecosystems. By breaking down chitin, these bacteria contribute to the decomposition process, which is essential for soil fertility and the overall health of ecosystems. In summary, the Chitinophagaceae bacterium, with its eight replicons and multiple genomic accessions, represents a complex organism with significant ecological implications, particularly in nutrient cycling and the degradation of chitin in natural environments.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Chitinophagaceae bacterium isolate PMG_188 scaffold_628813,

Gene Summary

Adenine Count

1340377 bp

Thymine Count

1331007 bp

Guanine Count

1048080 bp

Cytosine Count

1034598 bp

Genome Length

4796863 bp

Protein-coding Genes

4154 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux rnd transporter periplasmic adaptor subunitEOO06_08490Not AvailablePositive1883721 - 188495044342.7
efflux rnd transporter permease subunitEOO06_08495Not AvailablePositive1885001 - 188701874608.2
Trna-cysNot AvailableNot AvailablePositive1887066 - 1887139Not Available
t9ss type a sorting domain-containing proteinEOO06_08505Not AvailablePositive1887562 - 188877644280.2
hypothetical proteinEOO06_08510Not AvailablePositive1888795 - 188955025725.9
glucuronyl hydrolaseEOO06_08515Not AvailablePositive1889711 - 189093445842.3
hypothetical proteinEOO06_08520Not AvailablePositive1891031 - 189142915048.8
glutamine--trna ligase/yqey domain fusion proteinEOO06_08525Not AvailableNegative1891534 - 189318963918.7
acyl-coa desaturaseEOO06_08530Not AvailableNegative1893283 - 189436541843.2
bacillithiol biosynthesis deacetylase bshb1EOO06_08535Not AvailableNegative1894372 - 189510026902.4

Displaying genes 1681 – 1690 of 39401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.