Chitinophagaceae bacterium

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Description

The Chitinophagaceae bacterium is characterized by having eight replicons, which suggests a complex genomic structure that may contribute to its adaptability and survival in various environments. The organism's genetic material is represented by several accession numbers, including SEAH00000000.1, SDZV00000000.1, SEAA00000000.1, SDZZ00000000.1, SEAC00000000.1, SEAD00000000.1, SEAJ00000000.1, and SEAK00000000.1. These accession numbers indicate that the bacterium has been the subject of genomic sequencing, allowing for the exploration of its genetic characteristics. The presence of multiple replicons in Chitinophagaceae suggests a potential for horizontal gene transfer and a diverse metabolic capacity, which may enable it to thrive in various ecological niches. Bacteria within the Chitinophagaceae family are often associated with chitin degradation, which plays a significant role in nutrient cycling within ecosystems. By breaking down chitin, these bacteria contribute to the decomposition process, which is essential for soil fertility and the overall health of ecosystems. In summary, the Chitinophagaceae bacterium, with its eight replicons and multiple genomic accessions, represents a complex organism with significant ecological implications, particularly in nutrient cycling and the degradation of chitin in natural environments.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Chitinophagaceae bacterium isolate PMG_188 scaffold_628813,

Gene Summary

Adenine Count

1340377 bp

Thymine Count

1331007 bp

Guanine Count

1048080 bp

Cytosine Count

1034598 bp

Genome Length

4796863 bp

Protein-coding Genes

4154 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-70 family rna polymerase sigma factorEOO06_05800Not AvailablePositive1267207 - 126769818859.7
anti-sigma factorEOO06_05805Not AvailablePositive1267734 - 126848027229.8
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseEOO06_05810Not AvailableNegative1268962 - 127010942096.4
gliding motility lipoprotein gldjEOO06_05815Not AvailableNegative1270191 - 127175659171.5
type ix secretion system outer membrane channel protein porvEOO06_05820Not AvailablePositive1272190 - 127315534294.6
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseEOO06_05825Not AvailablePositive1273247 - 127372917391.1
t9ss type b sorting domain-containing proteinEOO06_05830Not AvailablePositive1273668 - 127583679251.7
dutp diphosphataseEOO06_05835Not AvailablePositive1275857 - 127629115577.8
duf4292 domain-containing proteinEOO06_05840Not AvailablePositive1276293 - 127712031409.1
hypothetical proteinEOO06_05845Not AvailablePositive1277195 - 127853850607.5

Displaying genes 1151 – 1160 of 39401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.