Chitinophagaceae bacterium

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Description

The Chitinophagaceae bacterium is characterized by having eight replicons, which suggests a complex genomic structure that may contribute to its adaptability and survival in various environments. The organism's genetic material is represented by several accession numbers, including SEAH00000000.1, SDZV00000000.1, SEAA00000000.1, SDZZ00000000.1, SEAC00000000.1, SEAD00000000.1, SEAJ00000000.1, and SEAK00000000.1. These accession numbers indicate that the bacterium has been the subject of genomic sequencing, allowing for the exploration of its genetic characteristics. The presence of multiple replicons in Chitinophagaceae suggests a potential for horizontal gene transfer and a diverse metabolic capacity, which may enable it to thrive in various ecological niches. Bacteria within the Chitinophagaceae family are often associated with chitin degradation, which plays a significant role in nutrient cycling within ecosystems. By breaking down chitin, these bacteria contribute to the decomposition process, which is essential for soil fertility and the overall health of ecosystems. In summary, the Chitinophagaceae bacterium, with its eight replicons and multiple genomic accessions, represents a complex organism with significant ecological implications, particularly in nutrient cycling and the degradation of chitin in natural environments.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Chitinophagaceae bacterium isolate PMG_188 scaffold_628813,

Gene Summary

Adenine Count

1340377 bp

Thymine Count

1331007 bp

Guanine Count

1048080 bp

Cytosine Count

1034598 bp

Genome Length

4796863 bp

Protein-coding Genes

4154 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rip metalloprotease rsepEOO06_00080Not AvailableNegative12825 - 1420451427.3
1-deoxy-d-xylulose-5-phosphate reductoisomeraseEOO06_00085Not AvailableNegative14221 - 1540843467.5
duf2461 domain-containing proteinEOO06_00090Not AvailablePositive15569 - 1623125174.1
hypothetical proteinEOO06_00095Not AvailableNegative16233 - 164789738.8
nuclear transport factor 2 family proteinEOO06_00100Not AvailableNegative16672 - 1702813793.3
porinEOO06_00105Not AvailableNegative17111 - 1848151371.5
potassium transporter kupEOO06_00110Not AvailableNegative18478 - 2044874750.3
response regulatorEOO06_00115Not AvailableNegative20478 - 2116425612.1
duf4118 domain-containing proteinEOO06_00120Not AvailableNegative21157 - 2223940120.1
hypothetical proteinEOO06_00125Not AvailableNegative22343 - 225467330.75

Displaying genes 91 – 100 of 39401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.