Gordonia sp. UCD-TK1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Gordoniaceae

Genus

Gordonia

Description

Gordonia sp. UCD-TK1 is a bacterial strain characterized by the presence of flagella, which suggests that it is motile and can navigate its environment effectively. This motility may play a role in its ecological interactions and ability to colonize various niches. The strain has a single replicon, indicating that it possesses a streamlined genomic organization that may contribute to its adaptability and efficiency in resource utilization. The genome of Gordonia sp. UCD-TK1 is represented in the accession LZMP00000000.1, which provides a reference for further genomic studies and comparisons with other strains within the Gordonia genus. This information is crucial for understanding the genetic basis of its traits and behaviors. Gordonia species are often noted for their ability to degrade complex organic compounds, which suggests that Gordonia sp. UCD-TK1 may play a significant role in bioremediation processes. The presence of flagella could enhance its ability to migrate toward pollutants or other organic substrates in contaminated environments. This motility, combined with its potential metabolic capabilities, underscores the ecological importance of Gordonia sp. UCD-TK1 in nutrient cycling and environmental cleanup. In summary, Gordonia sp. UCD-TK1's motility, genomic structure, and potential for organic compound degradation highlight its significance in both microbial ecology and biotechnological applications.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyGordoniaceae
GenusGordonia
SpeciesGordonia sp. UCD-TK1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gordonia sp. UCD-TK1 scaffold_96, whole genome shotgun sequence.

Gene Summary

Adenine Count

880690 bp

Thymine Count

877187 bp

Guanine Count

1858331 bp

Cytosine Count

1848314 bp

Genome Length

5464889 bp

Protein-coding Genes

4592 genes

Non-Coding Genes

218 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
translation initiation factor if-1A9310_06035A0QSL3Positive3949932 - 39501538487.49
50s ribosomal protein l36A9310_06040C0ZW50Positive3950271 - 39503844363.6
30s ribosomal protein s13A9310_06045Q0S3F0Positive3950595 - 395096313744.8
30s ribosomal protein s11A9310_06050Q5Z1L1Positive3950963 - 395137014406.2
30s ribosomal protein s4A9310_06055Q5Z1L0Positive3951395 - 395200023248.1
dna-directed rna polymerase subunit alphaA9310_06060Q5Z1K9Positive3952080 - 395313237794.7
50s ribosomal protein l17A9310_06065C1B042Positive3953214 - 395383421753.4
trna pseudouridine(38,39,40) synthase truaA9310_06070Q5Z1K7Positive3953971 - 395472927516.7
hypothetical proteinA9310_06075Not AvailableNegative3954819 - 395554425412.3
hypothetical proteinA9310_06080Not AvailableNegative3955604 - 395612818467.2

Displaying genes 3531 – 3540 of 4810 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

425 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 425 metabolites

Health Effects

No health effects information available for this bacterium.