Osedax symbiont bacterium Rs2_46_30_T18

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Description

Osedax symbiont bacterium Rs2_46_30_T18 is characterized by having a single replicon, which is a significant trait that can influence its genetic stability and replication dynamics. The genomic information for this bacterium is cataloged under the accession number MABF00000000.1, providing a reference for researchers interested in studying its genetic makeup. As a member of the Osedax genus, this bacterium is associated with the decomposition of marine organic matter, particularly in the context of consuming the remains of marine vertebrates. This ecological role highlights its importance in nutrient cycling within deep-sea environments. By breaking down hard organic substrates, such as bones, Osedax symbionts like Rs2_46_30_T18 contribute to the recycling of nutrients, making them available for other organisms in the ecosystem. The presence of a single replicon suggests that Rs2_46_30_T18 may have streamlined its genomic structure, which could be an adaptation to its specific ecological niche. This trait may enhance its ability to efficiently utilize the resources available in its habitat, particularly in the nutrient-scarce deep-sea environment. In summary, Osedax symbiont bacterium Rs2_46_30_T18, with its single replicon, plays a crucial role in the breakdown of marine organic materials, thereby facilitating nutrient recycling in deep-sea ecosystems. Its genomic characteristics may reflect adaptations that enable it to thrive in such specialized environments.

Taxonomy

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Species'Osedax' symbiont bacterium Rs2_46_30_T18
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

'Osedax' symbiont bacterium Rs2_46_30_T18 BD02T18_scaffold_1092,

Gene Summary

Adenine Count

1092398 bp

Thymine Count

1086927 bp

Guanine Count

914530 bp

Cytosine Count

926021 bp

Genome Length

4021833 bp

Protein-coding Genes

3665 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomeraseA9R01_12785Not AvailableNegative2757130 - 275792728857.7
phenylacetic acid degradation protein paayA9R01_12790Not AvailablePositive2758007 - 275859421176.4
phenylacetic acid degradation bifunctional protein paazA9R01_12795Not AvailableNegative2758664 - 276070974200.0
phenylacetate--coa ligaseA9R01_12800Not AvailablePositive2760883 - 276216947833.1
phenylacetic acid degradation operon negative regulatory protein paaxA9R01_12805Not AvailableNegative2762294 - 276322335249.3
c4-dicarboxylate abc transporter substrate-binding proteinA9R01_12810Not AvailablePositive2763869 - 276489136930.8
trap transporter small permease proteinA9R01_12815Not AvailablePositive2765047 - 276556219169.8
c4-dicarboxylate abc transporter permeaseA9R01_12820Not AvailablePositive2765602 - 276693047442.7
mbl fold metallo-hydrolaseA9R01_12825Not AvailablePositive2767353 - 276831535641.1
hypothetical proteinA9R01_12830Not AvailablePositive2768730 - 276965334289.1

Displaying genes 2541 – 2550 of 3727 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.