Halorubrum sp. SD612

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum sp. SD612 is a rod-shaped microorganism characterized by the presence of flagella, which suggests motility. This trait may enhance its ability to navigate its environment, potentially influencing its ecological interactions and survival strategies. The organism possesses a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in various conditions. The accession number for Halorubrum sp. SD612 is NEWI00000000.1, which provides a reference for further genomic studies and analyses. The unique characteristics of this species, particularly its morphology and motility, are essential for understanding its role in its native habitat, likely involving saline or hypersaline environments, given its classification within the Halorubrum genus. In ecological terms, the motility offered by flagella may allow Halorubrum sp. SD612 to effectively exploit nutrient sources and evade unfavorable conditions. Its rod shape can also be advantageous for surface attachment and biofilm formation, which are critical factors in microbial community dynamics and ecosystem functions. Understanding these traits not only sheds light on the organism's biology but also highlights its potential ecological roles in saline ecosystems.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum sp. SD612
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum sp. SD612 NODE_402_length_1004_cov_2.88826, whole

Gene Summary

Adenine Count

494767 bp

Thymine Count

493754 bp

Guanine Count

1159612 bp

Cytosine Count

1159856 bp

Genome Length

3308128 bp

Protein-coding Genes

3326 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinB9G38_12565Not AvailablePositive2442206 - 244284122802.6
pyridoxamine 5-phosphate oxidaseB9G38_12570Not AvailablePositive2443200 - 244365517111.7
rnd transporterB9G38_12580Not AvailableNegative2444383 - 244495419701.5
ornithine carbamoyltransferaseB9G38_12585Not AvailableNegative2445336 - 244623531993.3
acetyl-lysine deacetylaseB9G38_12590Not AvailableNegative2446300 - 244748141677.4
aspartate aminotransferase family proteinB9G38_12595Not AvailableNegative2447481 - 244860839739.7
acetylglutamate kinaseB9G38_12600Not AvailableNegative2448605 - 244957331797.7
n-acetyl-gamma-glutamyl-phosphate reductaseB9G38_12605Not AvailableNegative2449570 - 245061936434.2
lysine biosynthesis protein lysxB9G38_12610Not AvailableNegative2450616 - 245150932384.8
lysine biosynthesis protein lyswB9G38_12615Not AvailableNegative2451550 - 24517386684.54

Displaying genes 2441 – 2450 of 3378 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.