Sphingobium sp. EP60837

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. EP60837 is characterized by the presence of flagella, indicating its motility, which is a critical trait for its ecological interactions and survival in various environments. The organism possesses four replicons, suggesting a complex genomic structure that may contribute to its adaptability and metabolic diversity. The genomic information for Sphingobium sp. EP60837 is accessible through several accession numbers: NZ_CP015986.1, NZ_CP015987.1, NZ_CP015988.1, and NZ_CP015989.1. These sequences provide a foundation for understanding its genetic makeup and potential functions, as well as its evolutionary relationships with other members of the Sphingobium genus. The presence of flagella may enhance the organism’s ability to colonize new environments and interact with other microbial communities, which is crucial for nutrient cycling and ecosystem functioning. The four replicons may also indicate a capacity for horizontal gene transfer, which is often associated with the acquisition of new traits, such as the ability to degrade complex organic compounds or respond to environmental stressors. In summary, Sphingobium sp. EP60837, with its motility and complex genomic architecture, likely plays a significant role in its native habitat, contributing to microbial diversity and ecological balance. Understanding its traits can provide insights into its ecological functions and potential applications in bioremediation or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. EP60837
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. EP60837 plasmid pEP1, complete sequence.

Gene Summary

Adenine Count

55778 bp

Thymine Count

55404 bp

Guanine Count

79565 bp

Cytosine Count

78468 bp

Genome Length

269215 bp

Protein-coding Genes

256 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioredoxin trxaEP837_RS00980Not AvailablePositive223266 - 22358611303.7
inositol monophosphataseEP837_RS00985Not AvailableNegative223665 - 22447728778.4
bifunctional glutamate n-acetyltransferase/amino-acid acetyltransferase argjEP837_RS00990Not AvailableNegative224477 - 22570342223.1
preprotein translocase subunit secaEP837_RS00995Not AvailablePositive225857 - 228589102235.0
duf983 domain-containing proteinEP837_RS01000Not AvailableNegative228722 - 22913815031.5
hypothetical proteinEP837_RS01005Not AvailableNegative229417 - 2296538551.01
Trna-serNot AvailableNot AvailablePositive229755 - 229844Not Available
lytic transglycosylase domain-containing proteinEP837_RS01015Not AvailablePositive229993 - 23103938095.3
d-alanyl-d-alanine carboxypeptidase family proteinEP837_RS01020Not AvailablePositive231153 - 23231641170.5
dtmp kinaseEP837_RS01025Not AvailablePositive232313 - 23293922309.3

Displaying genes 711 – 720 of 4123 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.