Sphingobium sp. EP60837

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. EP60837 is characterized by the presence of flagella, indicating its motility, which is a critical trait for its ecological interactions and survival in various environments. The organism possesses four replicons, suggesting a complex genomic structure that may contribute to its adaptability and metabolic diversity. The genomic information for Sphingobium sp. EP60837 is accessible through several accession numbers: NZ_CP015986.1, NZ_CP015987.1, NZ_CP015988.1, and NZ_CP015989.1. These sequences provide a foundation for understanding its genetic makeup and potential functions, as well as its evolutionary relationships with other members of the Sphingobium genus. The presence of flagella may enhance the organism’s ability to colonize new environments and interact with other microbial communities, which is crucial for nutrient cycling and ecosystem functioning. The four replicons may also indicate a capacity for horizontal gene transfer, which is often associated with the acquisition of new traits, such as the ability to degrade complex organic compounds or respond to environmental stressors. In summary, Sphingobium sp. EP60837, with its motility and complex genomic architecture, likely plays a significant role in its native habitat, contributing to microbial diversity and ecological balance. Understanding its traits can provide insights into its ecological functions and potential applications in bioremediation or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. EP60837
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. EP60837 plasmid pEP1, complete sequence.

Gene Summary

Adenine Count

55778 bp

Thymine Count

55404 bp

Guanine Count

79565 bp

Cytosine Count

78468 bp

Genome Length

269215 bp

Protein-coding Genes

256 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is21-like element isrsp3 family transposaseEP837_RS19395Not AvailableNegative15681 - 1720157737.6
ydhr family proteinEP837_RS20795Not AvailableNegative17454 - 1776511379.4
gmc oxidoreductaseEP837_RS19400Not AvailableNegative17836 - 1826415192.3
is21-like element isrsp3 family helper atpase istbEP837_RS19405Not AvailableNegative18435 - 1921428312.1
is21-like element isrsp3 family transposaseEP837_RS19410Not AvailableNegative19204 - 2072457737.6
helix-turn-helix transcriptional regulatorEP837_RS19415Not AvailableNegative20865 - 211168934.83
single-stranded dna-binding proteinEP837_RS19420Not AvailableNegative21224 - 2153811657.7
recombinase family proteinEP837_RS19425Not AvailableNegative21932 - 2261525002.0
helix-turn-helix domain-containing proteinEP837_RS20800Not AvailablePositive22742 - 229998986.83
hypothetical proteinEP837_RS19430Not AvailablePositive23032 - 232929311.24

Displaying genes 271 – 280 of 4123 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.