Sphingobium sp. EP60837

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. EP60837 is characterized by the presence of flagella, indicating its motility, which is a critical trait for its ecological interactions and survival in various environments. The organism possesses four replicons, suggesting a complex genomic structure that may contribute to its adaptability and metabolic diversity. The genomic information for Sphingobium sp. EP60837 is accessible through several accession numbers: NZ_CP015986.1, NZ_CP015987.1, NZ_CP015988.1, and NZ_CP015989.1. These sequences provide a foundation for understanding its genetic makeup and potential functions, as well as its evolutionary relationships with other members of the Sphingobium genus. The presence of flagella may enhance the organism’s ability to colonize new environments and interact with other microbial communities, which is crucial for nutrient cycling and ecosystem functioning. The four replicons may also indicate a capacity for horizontal gene transfer, which is often associated with the acquisition of new traits, such as the ability to degrade complex organic compounds or respond to environmental stressors. In summary, Sphingobium sp. EP60837, with its motility and complex genomic architecture, likely plays a significant role in its native habitat, contributing to microbial diversity and ecological balance. Understanding its traits can provide insights into its ecological functions and potential applications in bioremediation or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. EP60837
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. EP60837 plasmid pEP1, complete sequence.

Gene Summary

Adenine Count

55778 bp

Thymine Count

55404 bp

Guanine Count

79565 bp

Cytosine Count

78468 bp

Genome Length

269215 bp

Protein-coding Genes

256 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cmcj/nvfi family oxidoreductaseEP837_RS18685Not AvailableNegative144456 - 14496219223.8
nuclear transport factor 2 family proteinEP837_RS18690Not AvailableNegative145163 - 14554913886.5
fad-binding oxidoreductaseEP837_RS18695Not AvailableNegative145706 - 14608313827.3
hypothetical proteinEP837_RS21185Not AvailablePositive146377 - 1465295764.92
cytochrome cEP837_RS20760Not AvailablePositive146848 - 1470698005.62
3-oxoadipyl-coa thiolaseEP837_RS18700Not AvailableNegative147104 - 14831241988.9
3-oxoacid coa-transferase subunit bEP837_RS18705Not AvailableNegative148332 - 14898823128.0
3-oxoacid coa-transferase subunit aEP837_RS18710Not AvailableNegative149002 - 14968524015.8
iclr family transcriptional regulator c-terminal domain-containing proteinEP837_RS18715Not AvailablePositive149826 - 15056326843.9
laci family dna-binding transcriptional regulatorEP837_RS18720Not AvailablePositive151262 - 15225135527.2

Displaying genes 121 – 130 of 4123 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.