Sphingomonas palmae

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas palmae is a rod-shaped bacterium that possesses flagella, enabling motility. This organism is characterized by having a single replicon, which is indicative of its genomic structure. The accession number for Sphingomonas palmae is FNZZ00000000.1, which serves as a reference for its genomic data. The presence of flagella is a notable trait, as it suggests that Sphingomonas palmae is capable of active movement in its environment, potentially aiding in its colonization and interaction with various ecological niches. The single replicon indicates a streamlined genomic organization, which could have implications for its metabolic capabilities and adaptability. From a biological perspective, the rod shape and motility provided by flagella may enhance the bacterium's ability to thrive in specific habitats, possibly allowing it to navigate towards nutrients or away from unfavorable conditions. This adaptability is vital for survival in diverse ecological contexts, where competition and environmental changes can influence microbial community dynamics. Understanding the traits of Sphingomonas palmae can contribute to broader insights into its ecological role and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas palmae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas palmae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. JS21-1 genome assembly, contig: Ga0075249_111,

Gene Summary

Adenine Count

536988 bp

Thymine Count

532174 bp

Guanine Count

1088605 bp

Cytosine Count

1114503 bp

Genome Length

3272897 bp

Protein-coding Genes

3110 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadp-dependent 3-hydroxy acid dehydrogenase ydfgSAMN05216382_0073Not AvailablePositive61689 - 6241425414.6
Trna-lysNot AvailableNot AvailablePositive63018 - 63093Not Available
cell elongation-specific peptidoglycan biosynthesis regulator rodaSAMN05216382_0075Not AvailableNegative63215 - 6432139467.7
peptidoglycan glycosyltransferaseSAMN05216382_0076Not AvailableNegative64318 - 6646277420.0
rod shape-determining protein mredSAMN05216382_0077Not AvailableNegative66459 - 6696517969.7
rod shape-determining protein mrecSAMN05216382_0078Not AvailableNegative66965 - 6788231468.1
rod shape-determining protein mrebSAMN05216382_0079Not AvailableNegative67899 - 6893936884.9
dna mismatch repair protein mutlSAMN05216382_0080Not AvailablePositive69075 - 7084463367.2
dna-binding transcriptional regulator, marr familySAMN05216382_0081Not AvailablePositive70936 - 7141217665.7
lsu ribosomal protein l9pSAMN05216382_0082Not AvailableNegative71725 - 7231821507.5

Displaying genes 71 – 80 of 3171 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.