Sphingomonas palmae

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas palmae is a rod-shaped bacterium that possesses flagella, enabling motility. This organism is characterized by having a single replicon, which is indicative of its genomic structure. The accession number for Sphingomonas palmae is FNZZ00000000.1, which serves as a reference for its genomic data. The presence of flagella is a notable trait, as it suggests that Sphingomonas palmae is capable of active movement in its environment, potentially aiding in its colonization and interaction with various ecological niches. The single replicon indicates a streamlined genomic organization, which could have implications for its metabolic capabilities and adaptability. From a biological perspective, the rod shape and motility provided by flagella may enhance the bacterium's ability to thrive in specific habitats, possibly allowing it to navigate towards nutrients or away from unfavorable conditions. This adaptability is vital for survival in diverse ecological contexts, where competition and environmental changes can influence microbial community dynamics. Understanding the traits of Sphingomonas palmae can contribute to broader insights into its ecological role and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas palmae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas palmae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. JS21-1 genome assembly, contig: Ga0075249_111,

Gene Summary

Adenine Count

536988 bp

Thymine Count

532174 bp

Guanine Count

1088605 bp

Cytosine Count

1114503 bp

Genome Length

3272897 bp

Protein-coding Genes

3110 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-octaprenyl-6-methoxy-1,4-benzoquinone methylase /demethylmenaquinone methyltransferaseSAMN05216382_0174Not AvailableNegative161641 - 16237827544.1
dna-(apurinic or apyrimidinic site) lyaseSAMN05216382_0175Not AvailablePositive162501 - 16334330750.0
ssu ribosomal protein s20pSAMN05216382_0176Not AvailablePositive163440 - 1637039407.56
chromosomal replication initiator protein dnaaSAMN05216382_0177Not AvailablePositive164154 - 16561153231.4
phage shock protein c (pspc) family proteinSAMN05216382_0178Not AvailableNegative165617 - 16591910250.4
tryptophanyl-trna synthetaseSAMN05216382_0179Not AvailableNegative166074 - 16709037008.5
putative peptidoglycan lipid ii flippaseSAMN05216382_0180Not AvailableNegative167087 - 16867655788.1
protein translocase subunit secbSAMN05216382_0181Not AvailableNegative168706 - 16921818462.6
predicted lipid-binding transport protein, tim44 familySAMN05216382_0182Not AvailablePositive169385 - 17002923116.2
membrane-bound lytic murein transglycosylase aSAMN05216382_0183Not AvailablePositive170260 - 17133337821.8

Displaying genes 171 – 180 of 3171 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.