Sphingomonas palmae

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas palmae is a rod-shaped bacterium that possesses flagella, enabling motility. This organism is characterized by having a single replicon, which is indicative of its genomic structure. The accession number for Sphingomonas palmae is FNZZ00000000.1, which serves as a reference for its genomic data. The presence of flagella is a notable trait, as it suggests that Sphingomonas palmae is capable of active movement in its environment, potentially aiding in its colonization and interaction with various ecological niches. The single replicon indicates a streamlined genomic organization, which could have implications for its metabolic capabilities and adaptability. From a biological perspective, the rod shape and motility provided by flagella may enhance the bacterium's ability to thrive in specific habitats, possibly allowing it to navigate towards nutrients or away from unfavorable conditions. This adaptability is vital for survival in diverse ecological contexts, where competition and environmental changes can influence microbial community dynamics. Understanding the traits of Sphingomonas palmae can contribute to broader insights into its ecological role and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas palmae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas palmae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. JS21-1 genome assembly, contig: Ga0075249_111,

Gene Summary

Adenine Count

536988 bp

Thymine Count

532174 bp

Guanine Count

1088605 bp

Cytosine Count

1114503 bp

Genome Length

3272897 bp

Protein-coding Genes

3110 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartyl protease family proteinSAMN05216382_1012Not AvailableNegative989155 - 99000330021.8
threonyl-trna synthetaseSAMN05216382_1013Not AvailablePositive990028 - 99203775718.2
outer membrane receptor proteins, mostly fe transportSAMN05216382_1014Not AvailablePositive992197 - 99496597904.4
bacterial translation initiation factor 3 (bif-3)SAMN05216382_1015Not AvailablePositive995132 - 99563519109.2
outer membrane receptor proteins, mostly fe transportSAMN05216382_1016Not AvailablePositive995870 - 99865999237.6
utp--glnb (protein pii) uridylyltransferase, glndSAMN05216382_1017Not AvailableNegative998716 - 1001520104406.0
dna mismatch repair protein mutsSAMN05216382_1018Not AvailableNegative1001520 - 100412091329.3
methylated-dna-[protein]-cysteine s-methyltransferaseSAMN05216382_1019Not AvailablePositive1004221 - 100471217295.5
allosteric nadp-dependent malic enzymeSAMN05216382_1020Not AvailablePositive1004752 - 100703481947.4
hypothetical proteinSAMN05216382_1021Not AvailablePositive1007128 - 100753513761.2

Displaying genes 1001 – 1010 of 3171 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.