Leisingera sp. JC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Leisingera

Description

Leisingera sp. JC1 is characterized by having a single replicon, which indicates that its genetic material is organized in a singular circular chromosome. This trait is significant as it can influence the organism's genetic stability and replication processes. The accession number for Leisingera sp. JC1 is LYUZ00000000.1, which serves as a unique identifier in genomic databases for further research and reference. While specific functional traits or ecological roles of Leisingera sp. JC1 are not detailed in the provided information, the presence of a single replicon suggests a streamlined genomic organization that can be advantageous for adaptation in various environments. Bacteria with such genomic structures can often exhibit efficient replication and may adapt quickly to changes in their surroundings. Understanding the genetic makeup of Leisingera sp. JC1 could provide insights into its potential ecological roles, particularly in microbial communities. The simplicity of having one replicon may also indicate specialized functions that allow it to thrive in specific niches. Overall, further exploration of Leisingera sp. JC1's ecology and physiology would be beneficial to fully comprehend its contributions to microbial diversity and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusLeisingera
SpeciesLeisingera sp. JC1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Leisingera sp. JC1


Gene Summary

Adenine Count

981174 bp

Thymine Count

977904 bp

Guanine Count

1610471 bp

Cytosine Count

1621027 bp

Genome Length

5190966 bp

Protein-coding Genes

4767 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinA9D60_22260Not AvailableNegative3979800 - 398039921495.2
Phage major capsid proteinA9D60_22265Not AvailableNegative3980580 - 398176142237.4
Putative prohead proteaseA9D60_22270P49860Negative3981758 - 398232420311.2
hypothetical proteinA9D60_22275Not AvailableNegative3982351 - 39825758602.52
Portal proteinA9D60_22280Q1RIH4Negative3982568 - 398379744675.7
Large packaging proteinA9D60_22285Not AvailableNegative3984092 - 398537846654.6
5s ribosomal rnaNot AvailableNot AvailablePositive13 - 127Not Available
prka family serine protein kinaseA9D60_00010P0ACY5Positive1222 - 315674218.9
hypothetical proteinA9D60_00015Q11LR5Positive3175 - 451251023.6
spovr family proteinA9D60_00020P29013Positive4499 - 601358581.3

Displaying genes 11 – 20 of 4838 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

344 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 344 metabolites

Health Effects

No health effects information available for this bacterium.