Halolamina sp. CBA1230

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halolamina

Description

Halolamina sp. CBA1230 is characterized by having four distinct replicons, which are essential for its genetic stability and replication processes. The organism has been cataloged with several accessions, specifically NZ_CP054590.1, NZ_CP054587.1, NZ_CP054588.1, and NZ_CP054589.1. These accessions represent different segments of its genomic information, providing a comprehensive view of its genetic makeup. The presence of multiple replicons in Halolamina sp. CBA1230 may indicate a sophisticated level of genetic regulation and adaptability, allowing it to thrive in diverse environments. This feature can be particularly advantageous in fluctuating ecological conditions, as it might facilitate the organism's ability to acquire and express various genes that contribute to its survival and metabolic capabilities. In microbial ecology, such organisms often play significant roles in biogeochemical cycles, especially in extreme environments where they might be found. The genetic diversity conferred by multiple replicons can enhance the organism's resilience and functionality, enabling it to contribute to nutrient cycling and other ecological processes effectively. Understanding the genomic structure of Halolamina sp. CBA1230 may provide insights into the evolutionary adaptations of microorganisms in extreme habitats.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalolamina
SpeciesHalolamina sp. CBA1230
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halolamina sp. CBA1230 plasmid pCBA1230-03, complete sequence.

Gene Summary

Adenine Count

11448 bp

Thymine Count

10809 bp

Guanine Count

15613 bp

Cytosine Count

15036 bp

Genome Length

52906 bp

Protein-coding Genes

54 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
homing endonuclease associated repeat-containing proteinB4589_RS16895Not AvailablePositive81668 - 8249231311.3
transcriptional regulator trmbB4589_RS16900Not AvailablePositive82818 - 8397443100.9
hypothetical proteinB4589_RS16905Not AvailablePositive84042 - 842638476.93
homing endonuclease associated repeat-containing proteinB4589_RS16910Not AvailablePositive84455 - 8567245864.2
hypothetical proteinB4589_RS16915Not AvailablePositive85813 - 8616012794.7
zinc-ribbon domain-containing proteinB4589_RS18525Not AvailableNegative86161 - 863075242.07
ardc-like ssdna-binding domain-containing proteinB4589_RS16925Not AvailablePositive86464 - 8739034600.0
sulfite exporter taue/safe family proteinB4589_RS16930Not AvailableNegative87410 - 8870847903.6
hypothetical proteinB4589_RS16935Not AvailablePositive88926 - 8974430851.5
hypothetical proteinB4589_RS16940Not AvailableNegative89752 - 9060632640.4

Displaying genes 3461 – 3470 of 3642 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.