Halolamina sp. CBA1230

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halolamina

Description

Halolamina sp. CBA1230 is characterized by having four distinct replicons, which are essential for its genetic stability and replication processes. The organism has been cataloged with several accessions, specifically NZ_CP054590.1, NZ_CP054587.1, NZ_CP054588.1, and NZ_CP054589.1. These accessions represent different segments of its genomic information, providing a comprehensive view of its genetic makeup. The presence of multiple replicons in Halolamina sp. CBA1230 may indicate a sophisticated level of genetic regulation and adaptability, allowing it to thrive in diverse environments. This feature can be particularly advantageous in fluctuating ecological conditions, as it might facilitate the organism's ability to acquire and express various genes that contribute to its survival and metabolic capabilities. In microbial ecology, such organisms often play significant roles in biogeochemical cycles, especially in extreme environments where they might be found. The genetic diversity conferred by multiple replicons can enhance the organism's resilience and functionality, enabling it to contribute to nutrient cycling and other ecological processes effectively. Understanding the genomic structure of Halolamina sp. CBA1230 may provide insights into the evolutionary adaptations of microorganisms in extreme habitats.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalolamina
SpeciesHalolamina sp. CBA1230
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halolamina sp. CBA1230 plasmid pCBA1230-03, complete sequence.

Gene Summary

Adenine Count

11448 bp

Thymine Count

10809 bp

Guanine Count

15613 bp

Cytosine Count

15036 bp

Genome Length

52906 bp

Protein-coding Genes

54 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium-dependent transporterB4589_RS07170Not AvailablePositive1381269 - 138261246436.1
cation diffusion facilitator family transporterB4589_RS07175Not AvailablePositive1382796 - 138370431632.7
carotenoid oxygenase family proteinB4589_RS07180Not AvailablePositive1383745 - 138513350569.5
hypothetical proteinB4589_RS07185Not AvailableNegative1385147 - 138606731617.7
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferaseB4589_RS07190Not AvailableNegative1386124 - 138737445958.6
deoxyribose-phosphate aldolaseB4589_RS07195Not AvailableNegative1387428 - 138806321927.6
duf63 family proteinB4589_RS07200Not AvailablePositive1388180 - 138898326884.3
amphi-trp domain-containing proteinB4589_RS07205Not AvailableNegative1389038 - 138933711183.3
helix-turn-helix domain-containing proteinB4589_RS07210Not AvailablePositive1389397 - 138967510698.8
hypothetical proteinB4589_RS07215Not AvailableNegative1389731 - 139012315216.7

Displaying genes 1491 – 1500 of 3642 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.