Halolamina sp. CBA1230

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halolamina

Description

Halolamina sp. CBA1230 is characterized by having four distinct replicons, which are essential for its genetic stability and replication processes. The organism has been cataloged with several accessions, specifically NZ_CP054590.1, NZ_CP054587.1, NZ_CP054588.1, and NZ_CP054589.1. These accessions represent different segments of its genomic information, providing a comprehensive view of its genetic makeup. The presence of multiple replicons in Halolamina sp. CBA1230 may indicate a sophisticated level of genetic regulation and adaptability, allowing it to thrive in diverse environments. This feature can be particularly advantageous in fluctuating ecological conditions, as it might facilitate the organism's ability to acquire and express various genes that contribute to its survival and metabolic capabilities. In microbial ecology, such organisms often play significant roles in biogeochemical cycles, especially in extreme environments where they might be found. The genetic diversity conferred by multiple replicons can enhance the organism's resilience and functionality, enabling it to contribute to nutrient cycling and other ecological processes effectively. Understanding the genomic structure of Halolamina sp. CBA1230 may provide insights into the evolutionary adaptations of microorganisms in extreme habitats.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalolamina
SpeciesHalolamina sp. CBA1230
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halolamina sp. CBA1230 plasmid pCBA1230-03, complete sequence.

Gene Summary

Adenine Count

11448 bp

Thymine Count

10809 bp

Guanine Count

15613 bp

Cytosine Count

15036 bp

Genome Length

52906 bp

Protein-coding Genes

54 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plastocyanin/azurin family copper-binding proteinB4589_RS00240Not AvailableNegative39673 - 4038623464.3
fad-dependent oxidoreductaseB4589_RS00245Not AvailableNegative40747 - 4139422113.9
2-oxoacid:acceptor oxidoreductase subunit alphaB4589_RS00250Not AvailablePositive41556 - 4330763953.1
2-oxoacid:ferredoxin oxidoreductase subunit betaB4589_RS00255Not AvailablePositive43304 - 4416731164.9
digeranylgeranylglycerophospholipid reductaseB4589_RS00260Not AvailablePositive44308 - 4554045245.0
fmdb family zinc ribbon proteinB4589_RS00265Not AvailablePositive45667 - 458044973.75
pyridoxamine 5'-phosphate oxidase family proteinB4589_RS00270Not AvailableNegative45805 - 4626917423.0
helix-turn-helix domain-containing proteinB4589_RS00275Not AvailableNegative46340 - 4696922628.4
winged helix-turn-helix domain-containing proteinB4589_RS00280Not AvailablePositive47099 - 4746713403.6
methylmalonyl-coa mutaseB4589_RS00285Not AvailablePositive47578 - 4927863673.3

Displaying genes 101 – 110 of 3642 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.