Orrella dioscoreae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Orrella

Description

Orrella dioscoreae is characterized by having a single replicon, which is an important trait for its genomic structure and functioning. This bacterium is cataloged under the accession number NZ_LT907988.1, indicating its identification and classification within microbial databases. The study of Orrella dioscoreae contributes to our understanding of microbial diversity and ecology, particularly in relation to its host, Dioscorea species, which are commonly known as yams. The relationship between the bacterium and its plant host may play a significant role in the health and development of these plants. Understanding the genomic traits of Orrella dioscoreae can provide insights into its ecological interactions and potential applications in agriculture or biotechnology, especially considering the significance of yams as a staple food source in many regions. Further research into this bacterium may elucidate its roles in nutrient cycling or plant health, highlighting its importance in the ecosystem where it resides.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusOrrella
SpeciesOrrella dioscoreae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Orrella dioscoreae isolate Orrdi1 chromosome I, complete sequence.

Gene Summary

Adenine Count

790150 bp

Thymine Count

788745 bp

Guanine Count

1634131 bp

Cytosine Count

1635075 bp

Genome Length

4848101 bp

Protein-coding Genes

4296 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system contractile sheath small subunitODI_RS03965Not AvailablePositive866361 - 86687919567.3
type vi secretion system contractile sheath large subunitODI_RS03970Not AvailablePositive866872 - 86836254835.9
type vi secretion system tube protein hcpODI_RS03975Not AvailablePositive868404 - 86890718537.7
type vi secretion system baseplate subunit tsseODI_RS03980Not AvailablePositive868985 - 86947017920.5
type vi secretion system baseplate subunit tssfODI_RS03985Not AvailablePositive869513 - 87135168257.6
type vi secretion system baseplate subunit tssgODI_RS03990Not AvailablePositive871315 - 87241840537.4
type vi secretion system atpase tsshODI_RS03995Not AvailablePositive872468 - 87518298097.5
type vi secretion system vgr family proteinODI_RS04000Not AvailablePositive875196 - 87788394857.2
duf4123 domain-containing proteinODI_RS04005Not AvailablePositive877880 - 87884835676.4
t6ss effector bth_i2691 family proteinODI_RS04010Not AvailablePositive878845 - 881715106016.0

Displaying genes 951 – 960 of 4458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.