Orrella dioscoreae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Orrella

Description

Orrella dioscoreae is characterized by having a single replicon, which is an important trait for its genomic structure and functioning. This bacterium is cataloged under the accession number NZ_LT907988.1, indicating its identification and classification within microbial databases. The study of Orrella dioscoreae contributes to our understanding of microbial diversity and ecology, particularly in relation to its host, Dioscorea species, which are commonly known as yams. The relationship between the bacterium and its plant host may play a significant role in the health and development of these plants. Understanding the genomic traits of Orrella dioscoreae can provide insights into its ecological interactions and potential applications in agriculture or biotechnology, especially considering the significance of yams as a staple food source in many regions. Further research into this bacterium may elucidate its roles in nutrient cycling or plant health, highlighting its importance in the ecosystem where it resides.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusOrrella
SpeciesOrrella dioscoreae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Orrella dioscoreae isolate Orrdi1 chromosome I, complete sequence.

Gene Summary

Adenine Count

790150 bp

Thymine Count

788745 bp

Guanine Count

1634131 bp

Cytosine Count

1635075 bp

Genome Length

4848101 bp

Protein-coding Genes

4296 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
caib/baif coa-transferase family proteinODI_RS12705Not AvailableNegative2715924 - 271713843095.1
enoyl-coa hydratase-related proteinODI_RS12710Not AvailableNegative2717151 - 271793328008.9
metq/nlpa family abc transporter substrate-binding proteinODI_RS12715Not AvailableNegative2718070 - 271887028681.3
iuca/iucc family siderophore biosynthesis proteinODI_RS12720Not AvailableNegative2719096 - 272095269586.5
mfs transporterODI_RS12725Not AvailableNegative2720949 - 272221445819.9
lysine n(6)-hydroxylase/l-ornithine n(5)-oxygenase family proteinODI_RS12730Not AvailableNegative2722211 - 272353950340.8
tonb-dependent siderophore receptorODI_RS12735Not AvailableNegative2723587 - 272602288406.8
fecr domain-containing proteinODI_RS12740Not AvailableNegative2726266 - 272729137141.1
sigma-70 family rna polymerase sigma factorODI_RS12745Not AvailableNegative2727284 - 272777818751.9
mfs transporterODI_RS12750Not AvailableNegative2727846 - 272907841991.6

Displaying genes 2591 – 2600 of 4458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.