Orrella dioscoreae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Orrella

Description

Orrella dioscoreae is characterized by having a single replicon, which is an important trait for its genomic structure and functioning. This bacterium is cataloged under the accession number NZ_LT907988.1, indicating its identification and classification within microbial databases. The study of Orrella dioscoreae contributes to our understanding of microbial diversity and ecology, particularly in relation to its host, Dioscorea species, which are commonly known as yams. The relationship between the bacterium and its plant host may play a significant role in the health and development of these plants. Understanding the genomic traits of Orrella dioscoreae can provide insights into its ecological interactions and potential applications in agriculture or biotechnology, especially considering the significance of yams as a staple food source in many regions. Further research into this bacterium may elucidate its roles in nutrient cycling or plant health, highlighting its importance in the ecosystem where it resides.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusOrrella
SpeciesOrrella dioscoreae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Orrella dioscoreae isolate Orrdi1 chromosome I, complete sequence.

Gene Summary

Adenine Count

790150 bp

Thymine Count

788745 bp

Guanine Count

1634131 bp

Cytosine Count

1635075 bp

Genome Length

4848101 bp

Protein-coding Genes

4296 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fadr/gntr family transcriptional regulatorODI_RS11765Not AvailablePositive2509162 - 250983324462.9
d-serine/d-alanine/glycine transporterODI_RS11770Not AvailablePositive2509987 - 251138750704.3
tripartite tricarboxylate transporter substrate binding proteinODI_RS11775Not AvailableNegative2511412 - 251238034074.0
dihydrodipicolinate synthase family proteinODI_RS11780Not AvailableNegative2512423 - 251332832432.4
gntr family transcriptional regulatorODI_RS11785Not AvailablePositive2513586 - 251426925320.7
quinone oxidoreductaseODI_RS11790Not AvailablePositive2514380 - 251536034188.0
cida/lrga family proteinODI_RS11795Not AvailablePositive2515460 - 251587314366.2
lrgb family proteinODI_RS11800Not AvailablePositive2515870 - 251660425594.0
duf2007 domain-containing proteinODI_RS11805Not AvailableNegative2516630 - 251707615807.6
lysr substrate-binding domain-containing proteinODI_RS11810Not AvailablePositive2517267 - 251813932305.2

Displaying genes 2401 – 2410 of 4458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.