Orrella dioscoreae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Orrella

Description

Orrella dioscoreae is characterized by having a single replicon, which is an important trait for its genomic structure and functioning. This bacterium is cataloged under the accession number NZ_LT907988.1, indicating its identification and classification within microbial databases. The study of Orrella dioscoreae contributes to our understanding of microbial diversity and ecology, particularly in relation to its host, Dioscorea species, which are commonly known as yams. The relationship between the bacterium and its plant host may play a significant role in the health and development of these plants. Understanding the genomic traits of Orrella dioscoreae can provide insights into its ecological interactions and potential applications in agriculture or biotechnology, especially considering the significance of yams as a staple food source in many regions. Further research into this bacterium may elucidate its roles in nutrient cycling or plant health, highlighting its importance in the ecosystem where it resides.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusOrrella
SpeciesOrrella dioscoreae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Orrella dioscoreae isolate Orrdi1 chromosome I, complete sequence.

Gene Summary

Adenine Count

790150 bp

Thymine Count

788745 bp

Guanine Count

1634131 bp

Cytosine Count

1635075 bp

Genome Length

4848101 bp

Protein-coding Genes

4296 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
electron transfer flavoprotein subunit beta/fixa family proteinODI_RS07770Not AvailablePositive1666969 - 166771826760.8
electron transfer flavoprotein subunit alpha/fixb family proteinODI_RS07775Not AvailablePositive1667721 - 166865031378.3
acyl-coa dehydrogenaseODI_RS07780Not AvailablePositive1668740 - 167056364317.9
peroxiredoxinODI_RS07785Not AvailablePositive1670672 - 167131323852.2
sulfate abc transporter substrate-binding proteinODI_RS07790Not AvailablePositive1671599 - 167261837506.5
sulfate abc transporter permease subunit cystODI_RS07795Not AvailablePositive1672637 - 167356332648.6
sulfate abc transporter permease subunit cyswODI_RS07800Not AvailablePositive1673682 - 167457232027.7
sulfate/molybdate abc transporter atp-binding proteinODI_RS07805Not AvailablePositive1674589 - 167566239676.2
phosphoadenylyl-sulfate reductaseODI_RS07810Not AvailablePositive1675704 - 167647427790.8
sulfate adenylyltransferase subunit cysdODI_RS07815Not AvailablePositive1676511 - 167741934328.7

Displaying genes 1651 – 1660 of 4458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.