Orrella dioscoreae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Orrella

Description

Orrella dioscoreae is characterized by having a single replicon, which is an important trait for its genomic structure and functioning. This bacterium is cataloged under the accession number NZ_LT907988.1, indicating its identification and classification within microbial databases. The study of Orrella dioscoreae contributes to our understanding of microbial diversity and ecology, particularly in relation to its host, Dioscorea species, which are commonly known as yams. The relationship between the bacterium and its plant host may play a significant role in the health and development of these plants. Understanding the genomic traits of Orrella dioscoreae can provide insights into its ecological interactions and potential applications in agriculture or biotechnology, especially considering the significance of yams as a staple food source in many regions. Further research into this bacterium may elucidate its roles in nutrient cycling or plant health, highlighting its importance in the ecosystem where it resides.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusOrrella
SpeciesOrrella dioscoreae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Orrella dioscoreae isolate Orrdi1 chromosome I, complete sequence.

Gene Summary

Adenine Count

790150 bp

Thymine Count

788745 bp

Guanine Count

1634131 bp

Cytosine Count

1635075 bp

Genome Length

4848101 bp

Protein-coding Genes

4296 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
swib/mdm2 domain-containing proteinODI_RS04610Not AvailableNegative1011266 - 101153810030.2
m20 aminoacylase family proteinODI_RS04615Not AvailablePositive1011682 - 101286942226.9
dihydroorotaseODI_RS04620Not AvailablePositive1012947 - 101400538367.9
atp-binding cassette domain-containing proteinODI_RS04625Not AvailableNegative1014002 - 101583767479.8
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive1015942 - 1016337Not Available
division/cell wall cluster transcriptional repressor mrazODI_RS04635Not AvailablePositive1016714 - 101714215700.0
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhODI_RS04640Not AvailablePositive1017150 - 101823238441.9
cell division protein ftslODI_RS04645Not AvailablePositive1018233 - 101852310892.3
penicillin-binding protein 2ODI_RS04650Not AvailablePositive1018520 - 102025663222.1
bifunctional udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase mure/udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase murfODI_RS04655Not AvailablePositive1020253 - 102308198248.3

Displaying genes 1081 – 1090 of 4458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.