Actinomyces sp. Chiba101

Rodfacultative anaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Actinomycetales

Family

Actinomycetaceae

Genus

Actinomyces

Description

Actinomyces sp. Chiba101 is a Gram-positive bacterium characterized by its rod shape and facultative anaerobic oxygen requirement. This organism has a single replicon, indicating a relatively straightforward genetic structure. It is associated with the host Sus scrofa, which is commonly known as the domestic pig. The pathogenicity of Actinomyces sp. Chiba101 is noted to be animal-related, highlighting its potential impact on animal health. Understanding the interactions between this bacterium and its porcine hosts could provide insights into its role in the microbiome of swine and its implications for veterinary medicine. The accession number NZ_AP017896.1 serves as a reference for genomic data related to this specific strain, facilitating further research and potential applications in microbial studies. The presence of Actinomyces sp. Chiba101 in the gastrointestinal tract of pigs may suggest a role in digestion or nutrient absorption, as many Actinomyces species are known to contribute to the breakdown of complex carbohydrates. Overall, the study of Actinomyces sp. Chiba101 in Sus scrofa could reveal important ecological relationships and its influence on the health and productivity of its host.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderActinomycetales
FamilyActinomycetaceae
GenusActinomyces
SpeciesActinomyces sp. Chiba101
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Actinomyces sp. Chiba101
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Actinomyces sp. Chiba101 chromosome, complete genome.

Gene Summary

Adenine Count

415352 bp

Thymine Count

411063 bp

Guanine Count

1023299 bp

Cytosine Count

1028150 bp

Genome Length

2877864 bp

Protein-coding Genes

2310 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i-e crispr-associated endoribonuclease cas2eCHIBA101_RS04050Not AvailableNegative950722 - 95111414563.6
type i-e crispr-associated endonuclease cas1eCHIBA101_RS04055Not AvailableNegative951108 - 95205535083.9
type i-e crispr-associated protein cas6/cse3/caseCHIBA101_RS04060Not AvailableNegative952058 - 95274724979.0
type i-e crispr-associated protein cas5/casdCHIBA101_RS04065Not AvailableNegative952738 - 95345126470.4
type i-e crispr-associated protein cas7/cse4/cascCHIBA101_RS04070Not AvailableNegative953451 - 95458140506.6
type i-e crispr-associated protein cse2/casbCHIBA101_RS04075Not AvailableNegative954583 - 95528725522.1
type i-e crispr-associated protein cse1/casaCHIBA101_RS04080Not AvailableNegative955284 - 95694260676.4
crispr-associated helicase/endonuclease cas3CHIBA101_RS04085Not AvailableNegative956939 - 959902108542.0
type ii toxin-antitoxin system phd/yefm family antitoxinCHIBA101_RS04090Not AvailableNegative960318 - 96061110599.8
cysteine desulfurase family proteinCHIBA101_RS04095Not AvailableNegative960626 - 96198145236.1

Displaying genes 811 – 820 of 2373 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.