Actinomyces sp. Chiba101

Rodfacultative anaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Actinomycetales

Family

Actinomycetaceae

Genus

Actinomyces

Description

Actinomyces sp. Chiba101 is a Gram-positive bacterium characterized by its rod shape and facultative anaerobic oxygen requirement. This organism has a single replicon, indicating a relatively straightforward genetic structure. It is associated with the host Sus scrofa, which is commonly known as the domestic pig. The pathogenicity of Actinomyces sp. Chiba101 is noted to be animal-related, highlighting its potential impact on animal health. Understanding the interactions between this bacterium and its porcine hosts could provide insights into its role in the microbiome of swine and its implications for veterinary medicine. The accession number NZ_AP017896.1 serves as a reference for genomic data related to this specific strain, facilitating further research and potential applications in microbial studies. The presence of Actinomyces sp. Chiba101 in the gastrointestinal tract of pigs may suggest a role in digestion or nutrient absorption, as many Actinomyces species are known to contribute to the breakdown of complex carbohydrates. Overall, the study of Actinomyces sp. Chiba101 in Sus scrofa could reveal important ecological relationships and its influence on the health and productivity of its host.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderActinomycetales
FamilyActinomycetaceae
GenusActinomyces
SpeciesActinomyces sp. Chiba101
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Actinomyces sp. Chiba101
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Actinomyces sp. Chiba101 chromosome, complete genome.

Gene Summary

Adenine Count

415352 bp

Thymine Count

411063 bp

Guanine Count

1023299 bp

Cytosine Count

1028150 bp

Genome Length

2877864 bp

Protein-coding Genes

2310 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseCHIBA101_RS10330Not AvailableNegative2490208 - 249126337921.7
exodeoxyribonuclease vii large subunitCHIBA101_RS10335Not AvailablePositive2491325 - 249262646930.7
glycoside hydrolase family 32 proteinCHIBA101_RS10340Not AvailableNegative2492711 - 249435758413.0
exodeoxyribonuclease vii small subunitCHIBA101_RS10345Not AvailablePositive2494510 - 24947618796.03
pfkb family carbohydrate kinaseCHIBA101_RS10350Not AvailablePositive2494807 - 249578733914.1
isoprenyl transferaseCHIBA101_RS10355Not AvailableNegative2495979 - 249675828965.3
paqr family membrane homeostasis protein trhaCHIBA101_RS10360Not AvailablePositive2496939 - 249767626543.6
grea/greb family elongation factorCHIBA101_RS10365Not AvailablePositive2498009 - 249850017471.3
peptide-methionine (s)-s-oxide reductase msraCHIBA101_RS10370Not AvailablePositive2498593 - 249929125015.5
lyse/argo family amino acid transporterCHIBA101_RS10375Not AvailableNegative2499457 - 250007121211.3

Displaying genes 2061 – 2070 of 2373 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.