Actinomyces sp. Chiba101

Rodfacultative anaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Actinomycetales

Family

Actinomycetaceae

Genus

Actinomyces

Description

Actinomyces sp. Chiba101 is a Gram-positive bacterium characterized by its rod shape and facultative anaerobic oxygen requirement. This organism has a single replicon, indicating a relatively straightforward genetic structure. It is associated with the host Sus scrofa, which is commonly known as the domestic pig. The pathogenicity of Actinomyces sp. Chiba101 is noted to be animal-related, highlighting its potential impact on animal health. Understanding the interactions between this bacterium and its porcine hosts could provide insights into its role in the microbiome of swine and its implications for veterinary medicine. The accession number NZ_AP017896.1 serves as a reference for genomic data related to this specific strain, facilitating further research and potential applications in microbial studies. The presence of Actinomyces sp. Chiba101 in the gastrointestinal tract of pigs may suggest a role in digestion or nutrient absorption, as many Actinomyces species are known to contribute to the breakdown of complex carbohydrates. Overall, the study of Actinomyces sp. Chiba101 in Sus scrofa could reveal important ecological relationships and its influence on the health and productivity of its host.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderActinomycetales
FamilyActinomycetaceae
GenusActinomyces
SpeciesActinomyces sp. Chiba101
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Actinomyces sp. Chiba101
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Actinomyces sp. Chiba101 chromosome, complete genome.

Gene Summary

Adenine Count

415352 bp

Thymine Count

411063 bp

Guanine Count

1023299 bp

Cytosine Count

1028150 bp

Genome Length

2877864 bp

Protein-coding Genes

2310 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1501 domain-containing proteinCHIBA101_RS07005Not AvailableNegative1697576 - 169903951976.1
duf1800 family proteinCHIBA101_RS07010Not AvailableNegative1699057 - 170110270856.8
Trna-asnNot AvailableNot AvailablePositive1701589 - 1701660Not Available
hypothetical proteinCHIBA101_RS07020Not AvailableNegative1701752 - 170235421724.7
dna primaseCHIBA101_RS07025Not AvailableNegative1702351 - 170433972187.0
deoxyguanosinetriphosphate triphosphohydrolaseCHIBA101_RS07030Not AvailableNegative1704468 - 170574545917.0
glycosidaseCHIBA101_RS07035Not AvailablePositive1706068 - 170729444859.2
extracellular solute-binding proteinCHIBA101_RS07040Not AvailablePositive1707454 - 170874344028.5
abc transporter permease subunitCHIBA101_RS07045Not AvailablePositive1708796 - 171039757612.8
sugar abc transporter permeaseCHIBA101_RS07050Not AvailablePositive1710419 - 171137834508.8

Displaying genes 1401 – 1410 of 2373 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.