Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Rhizorhabdaceae
Genus
Rhizorhabdus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Rhizorhabdaceae |
| Genus | Rhizorhabdus |
| Species | Rhizorhabdus dicambivorans |
| Strain | Ndbn-20m |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
904801 bp
Thymine Count
909038 bp
Guanine Count
1719569 bp
Cytosine Count
1714086 bp
Genome Length
5247494 bp
Protein-coding Genes
4858 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s2 | COO09_10325 | Not Available | Positive | 2180342 - 2181097 | 27209.7 |
| elongation factor ts | COO09_10330 | Not Available | Positive | 2181206 - 2182129 | 31620.8 |
| ump kinase | COO09_10335 | Not Available | Positive | 2182263 - 2182976 | 25471.8 |
| ribosome recycling factor | COO09_10340 | Not Available | Positive | 2182992 - 2183549 | 20323.3 |
| di-trans,poly-cis-decaprenylcistransferase | COO09_10345 | Not Available | Positive | 2183546 - 2184292 | 27308.6 |
| phosphatidate cytidylyltransferase | COO09_10350 | Not Available | Positive | 2184294 - 2185100 | 27764.9 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | COO09_10355 | Not Available | Positive | 2185097 - 2186260 | 40003.2 |
| rip metalloprotease rsep | COO09_10360 | Not Available | Positive | 2186257 - 2187390 | 41170.0 |
| outer membrane protein assembly factor bama | COO09_10365 | Not Available | Positive | 2187422 - 2190178 | 102470.0 |
| outer membrane chaperone skp | COO09_10370 | Not Available | Positive | 2190178 - 2190801 | 21548.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
