Rhizorhabdus dicambivorans str. Ndbn-20m

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Rhizorhabdus dicambivorans str. Ndbn-20m is a Gram-negative bacterium characterized as aerobic and rod-shaped. This species is non-motile and does not form spores, indicating a reliance on environmental conditions for survival and reproduction rather than on dormant stages. It thrives optimally at a temperature of 29°C, placing it within the mesophilic temperature range. The organism has a single replicon, which is significant for its genetic stability and replication processes. The absence of sporulation suggests that R. dicambivorans may inhabit environments where conditions remain favorable for growth, as it does not possess the ability to endure harsh conditions through sporulation. The ecological role of Rhizorhabdus dicambivorans str. Ndbn-20m may involve interactions with its surrounding microbial community, contributing to the nutrient cycling and degradation processes in its environment. Given its aerobic nature, it likely plays a part in aerobic decomposition, potentially influencing the availability of organic matter and nutrients in its habitat. Understanding the specific ecological interactions and functions of this bacterium could provide insights into its role in microbial ecosystems and its potential applications in bioremediation or agriculture. The accession number for this strain is NWUF00000000.1, which can be used for further genomic and taxonomic research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus dicambivorans
StrainNdbn-20m

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizorhabdus dicambivorans strain Ndbn-20m Scaffold94, whole

Gene Summary

Adenine Count

904801 bp

Thymine Count

909038 bp

Guanine Count

1719569 bp

Cytosine Count

1714086 bp

Genome Length

5247494 bp

Protein-coding Genes

4858 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prephenate dehydrataseCOO09_06865Not AvailableNegative1438696 - 143959231980.1
cytochrome c family proteinCOO09_06870Not AvailablePositive1439750 - 144037921242.7
phosphoserine transaminaseCOO09_06875Not AvailablePositive1440716 - 144187641351.4
phosphoglycerate dehydrogenaseCOO09_06880Not AvailablePositive1442018 - 144359555180.9
atp phosphoribosyltransferase regulatory subunitCOO09_06890Not AvailablePositive1444031 - 144514639051.2
adenylosuccinate synthaseCOO09_06895Not AvailablePositive1445165 - 144645446424.3
duf885 domain-containing proteinCOO09_06900Not AvailableNegative1446512 - 144835366810.5
transglutaminase family proteinCOO09_06905Not AvailableNegative1448426 - 144922029414.9
spfh/band 7/phb domain proteinCOO09_06910Not AvailablePositive1449330 - 145033436367.9
nfed family proteinCOO09_06915Not AvailablePositive1450331 - 145078015767.3

Displaying genes 1361 – 1370 of 4911 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.