Paenibacillus oryzae str. 1DrF-4

rodfacultative aerobe/anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus oryzae str. 1DrF-4 is a Gram-positive bacterium characterized by its rod-shaped morphology. This organism demonstrates a facultative aerobe/anaerobe oxygen requirement, allowing it to thrive in varying environments by utilizing oxygen when available and switching to anaerobic metabolism when necessary. A notable feature of Paenibacillus oryzae str. 1DrF-4 is its ability to form spores, which contributes to its survival in adverse conditions. The presence of a single replicon indicates a streamlined genetic organization, which may facilitate efficient replication and adaptability. The genomic accession for Paenibacillus oryzae str. 1DrF-4 is LYPA00000000.1, signifying that the sequence data for this strain is available for further research and analysis. From an ecological perspective, the traits of Paenibacillus oryzae str. 1DrF-4 suggest it may play a role in soil health and nutrient cycling. Its ability to form spores allows it to endure environmental stresses, and its facultative metabolism enables it to occupy diverse ecological niches. This versatility could contribute to its interactions in soil ecosystems, potentially aiding in the breakdown of organic matter and influencing microbial community dynamics.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus oryzae
Strain1DrF-4

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus oryzae strain 1DrF-4 scaffold9, whole genome shotgun

Gene Summary

Adenine Count

1494403 bp

Thymine Count

1490377 bp

Guanine Count

1472067 bp

Cytosine Count

1448354 bp

Genome Length

5905968 bp

Protein-coding Genes

5020 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyl hydrolaseA7K91_21580Not AvailablePositive81683 - 8393883481.0
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)A7K91_21585Not AvailablePositive84268 - 8613967233.8
myo-inosose-2 dehydrataseA7K91_21590Not AvailablePositive86278 - 8718333634.8
5-dehydro-2-deoxygluconokinaseA7K91_21595Not AvailablePositive87591 - 8858936159.8
methylmalonate-semialdehyde dehydrogenase (acylating)A7K91_21600Not AvailablePositive88620 - 9008952653.1
inositol 2-dehydrogenaseA7K91_21605Not AvailablePositive90172 - 9120336825.7
5-deoxy-glucuronate isomeraseA7K91_21610Not AvailablePositive91280 - 9209529854.2
transcriptional regulatorA7K91_21615Not AvailablePositive92229 - 9327838341.1
hypothetical proteinA7K91_02595Not AvailableNegative93517 - 9386113419.8
hypothetical proteinA7K91_02600Not AvailableNegative93916 - 9446120237.8

Displaying genes 61 – 70 of 5020 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.