Paenibacillus oryzae str. 1DrF-4

rodfacultative aerobe/anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus oryzae str. 1DrF-4 is a Gram-positive bacterium characterized by its rod-shaped morphology. This organism demonstrates a facultative aerobe/anaerobe oxygen requirement, allowing it to thrive in varying environments by utilizing oxygen when available and switching to anaerobic metabolism when necessary. A notable feature of Paenibacillus oryzae str. 1DrF-4 is its ability to form spores, which contributes to its survival in adverse conditions. The presence of a single replicon indicates a streamlined genetic organization, which may facilitate efficient replication and adaptability. The genomic accession for Paenibacillus oryzae str. 1DrF-4 is LYPA00000000.1, signifying that the sequence data for this strain is available for further research and analysis. From an ecological perspective, the traits of Paenibacillus oryzae str. 1DrF-4 suggest it may play a role in soil health and nutrient cycling. Its ability to form spores allows it to endure environmental stresses, and its facultative metabolism enables it to occupy diverse ecological niches. This versatility could contribute to its interactions in soil ecosystems, potentially aiding in the breakdown of organic matter and influencing microbial community dynamics.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus oryzae
Strain1DrF-4

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus oryzae strain 1DrF-4 scaffold9, whole genome shotgun

Gene Summary

Adenine Count

1494403 bp

Thymine Count

1490377 bp

Guanine Count

1472067 bp

Cytosine Count

1448354 bp

Genome Length

5905968 bp

Protein-coding Genes

5020 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nickel import atp-binding protein nikdA7K91_08205Not AvailableNegative4437707 - 443852830295.2
peptide abc transporter permeaseA7K91_08210Not AvailableNegative4438533 - 443942632901.2
nickel abc transporter permease subunit nikbA7K91_08215Not AvailableNegative4439427 - 444035934132.6
bifunctional acetaldehyde-coa/alcohol dehydrogenaseA7K91_08225Not AvailablePositive4442565 - 444518395547.1
udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseA7K91_08230Not AvailablePositive4445464 - 444654639628.2
laci family transcriptional regulatorA7K91_08235Not AvailablePositive4446954 - 444798537849.3
dehydrogenaseA7K91_08240Not AvailablePositive4448145 - 444930842910.2
hypothetical proteinA7K91_08245Not AvailablePositive4449358 - 445008626537.4
oxidoreductaseA7K91_08250Not AvailablePositive4450119 - 445122239119.0
acetyltransferaseA7K91_08255Not AvailableNegative4451429 - 445192918884.7

Displaying genes 3771 – 3780 of 5020 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.