Paenibacillus oryzae str. 1DrF-4

rodfacultative aerobe/anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus oryzae str. 1DrF-4 is a Gram-positive bacterium characterized by its rod-shaped morphology. This organism demonstrates a facultative aerobe/anaerobe oxygen requirement, allowing it to thrive in varying environments by utilizing oxygen when available and switching to anaerobic metabolism when necessary. A notable feature of Paenibacillus oryzae str. 1DrF-4 is its ability to form spores, which contributes to its survival in adverse conditions. The presence of a single replicon indicates a streamlined genetic organization, which may facilitate efficient replication and adaptability. The genomic accession for Paenibacillus oryzae str. 1DrF-4 is LYPA00000000.1, signifying that the sequence data for this strain is available for further research and analysis. From an ecological perspective, the traits of Paenibacillus oryzae str. 1DrF-4 suggest it may play a role in soil health and nutrient cycling. Its ability to form spores allows it to endure environmental stresses, and its facultative metabolism enables it to occupy diverse ecological niches. This versatility could contribute to its interactions in soil ecosystems, potentially aiding in the breakdown of organic matter and influencing microbial community dynamics.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus oryzae
Strain1DrF-4

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus oryzae strain 1DrF-4 scaffold9, whole genome shotgun

Gene Summary

Adenine Count

1494403 bp

Thymine Count

1490377 bp

Guanine Count

1472067 bp

Cytosine Count

1448354 bp

Genome Length

5905968 bp

Protein-coding Genes

5020 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
elongation factor tsA7K91_16355Not AvailablePositive1618167 - 161881724012.8
ump kinaseA7K91_16360Not AvailablePositive1618922 - 161965026141.7
ribosome recycling factorA7K91_16365Not AvailablePositive1619650 - 162020420614.6
isoprenyl transferaseA7K91_16370Not AvailablePositive1620359 - 162112329110.0
phosphatidate cytidylyltransferaseA7K91_16375Not AvailablePositive1621152 - 162194627966.2
1-deoxy-d-xylulose-5-phosphate reductoisomeraseA7K91_16380Not AvailablePositive1622018 - 162315740610.8
rip metalloprotease rsepA7K91_16385Not AvailablePositive1623304 - 162456646342.0
proline--trna ligaseA7K91_16390Not AvailablePositive1624578 - 162602655314.9
polc-type dna polymerase iiiA7K91_16395Not AvailablePositive1626085 - 1630401161448.0
ribosome maturation factor rimpA7K91_16400Not AvailablePositive1630570 - 163103117061.3

Displaying genes 1371 – 1380 of 5020 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.