Paenibacillus oryzae str. 1DrF-4

rodfacultative aerobe/anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus oryzae str. 1DrF-4 is a Gram-positive bacterium characterized by its rod-shaped morphology. This organism demonstrates a facultative aerobe/anaerobe oxygen requirement, allowing it to thrive in varying environments by utilizing oxygen when available and switching to anaerobic metabolism when necessary. A notable feature of Paenibacillus oryzae str. 1DrF-4 is its ability to form spores, which contributes to its survival in adverse conditions. The presence of a single replicon indicates a streamlined genetic organization, which may facilitate efficient replication and adaptability. The genomic accession for Paenibacillus oryzae str. 1DrF-4 is LYPA00000000.1, signifying that the sequence data for this strain is available for further research and analysis. From an ecological perspective, the traits of Paenibacillus oryzae str. 1DrF-4 suggest it may play a role in soil health and nutrient cycling. Its ability to form spores allows it to endure environmental stresses, and its facultative metabolism enables it to occupy diverse ecological niches. This versatility could contribute to its interactions in soil ecosystems, potentially aiding in the breakdown of organic matter and influencing microbial community dynamics.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus oryzae
Strain1DrF-4

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus oryzae strain 1DrF-4 scaffold9, whole genome shotgun

Gene Summary

Adenine Count

1494403 bp

Thymine Count

1490377 bp

Guanine Count

1472067 bp

Cytosine Count

1448354 bp

Genome Length

5905968 bp

Protein-coding Genes

5020 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar abc transporter permeaseA7K91_22440Not AvailableNegative1282292 - 128320334441.0
sugar abc transporter substrate-binding proteinA7K91_22445Not AvailableNegative1283480 - 128480548328.2
hypothetical proteinA7K91_22450Not AvailableNegative1285004 - 128660261081.6
two-component sensor histidine kinaseA7K91_22455Not AvailableNegative1286577 - 128836468228.0
hypothetical proteinA7K91_22460Not AvailableNegative1288621 - 129105388409.2
hypothetical proteinA7K91_22465Not AvailableNegative1291177 - 129145510350.2
dna-binding proteinA7K91_22470Not AvailableNegative1291675 - 129235525526.0
abc transporterA7K91_22475Not AvailableNegative1292386 - 129405662674.9
hypothetical proteinA7K91_22480Not AvailableNegative1294071 - 129436710901.3
multifunctional nuclease/2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidaseA7K91_22485Not AvailableNegative1294698 - 1300370200559.0

Displaying genes 1071 – 1080 of 5020 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.