Sphingobium sp. RAC03

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. RAC03 is a notable bacterium characterized by the presence of flagella, which suggests it has motility capabilities. This trait may enable it to navigate through various environments, potentially aiding in its ecological interactions and nutrient acquisition. The genomic structure of Sphingobium sp. RAC03 is complex, featuring a total of five replicons. This characteristic may imply a sophisticated level of genetic regulation and adaptability, as multiple replicons can enable the organism to carry diverse genetic information that may be advantageous in fluctuating environmental conditions. The strain has been cataloged with several accession numbers, including NZ_CP016454.1, NZ_CP016455.1, NZ_CP016456.1, NZ_CP016453.1, and NZ_CP016457.1. These accessions provide a basis for further research and allow for the exploration of its genomic features and potential applications in biotechnology or environmental microbiology. The combination of motility and complex genetic architecture may position Sphingobium sp. RAC03 as a versatile organism within its ecosystem. Its ability to move and adapt to different conditions could play a significant role in biogeochemical cycles, particularly in environments where it can interact with various substrates and microbial communities. Understanding these traits may contribute to insights into its ecological roles and potential uses in bioremediation or other applications in microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. RAC03
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. RAC03 plasmid pBSY17_4, complete sequence.

Gene Summary

Adenine Count

9470 bp

Thymine Count

9669 bp

Guanine Count

15180 bp

Cytosine Count

15418 bp

Genome Length

49737 bp

Protein-coding Genes

49 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conjugal transfer protein tranBSY17_RS04690Not AvailablePositive17105 - 1821138816.2
type-f conjugative transfer system pilin assembly protein trbcBSY17_RS22105Not AvailablePositive18537 - 1907619116.2
s26 family signal peptidaseBSY17_RS04700Not AvailablePositive19048 - 1964722300.3
conjugal transfer protein trafBSY17_RS04705Not AvailablePositive19644 - 2054633079.6
hypothetical proteinBSY17_RS04710Not AvailablePositive20621 - 2113918572.5
atp-binding proteinBSY17_RS04715Not AvailableNegative21163 - 2232942744.7
conjugal transfer protein trahBSY17_RS04720Not AvailablePositive22437 - 2385851334.9
conjugal transfer protein trag n-terminal domain-containing proteinBSY17_RS04725Not AvailablePositive23883 - 27635131679.0
fita-like ribbon-helix-helix domain-containing proteinBSY17_RS04735Not AvailablePositive28214 - 284628919.44
type ii toxin-antitoxin system vapc family toxinBSY17_RS04740Not AvailablePositive28462 - 2888114529.3

Displaying genes 961 – 970 of 4203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.