Sphingobium sp. RAC03

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. RAC03 is a notable bacterium characterized by the presence of flagella, which suggests it has motility capabilities. This trait may enable it to navigate through various environments, potentially aiding in its ecological interactions and nutrient acquisition. The genomic structure of Sphingobium sp. RAC03 is complex, featuring a total of five replicons. This characteristic may imply a sophisticated level of genetic regulation and adaptability, as multiple replicons can enable the organism to carry diverse genetic information that may be advantageous in fluctuating environmental conditions. The strain has been cataloged with several accession numbers, including NZ_CP016454.1, NZ_CP016455.1, NZ_CP016456.1, NZ_CP016453.1, and NZ_CP016457.1. These accessions provide a basis for further research and allow for the exploration of its genomic features and potential applications in biotechnology or environmental microbiology. The combination of motility and complex genetic architecture may position Sphingobium sp. RAC03 as a versatile organism within its ecosystem. Its ability to move and adapt to different conditions could play a significant role in biogeochemical cycles, particularly in environments where it can interact with various substrates and microbial communities. Understanding these traits may contribute to insights into its ecological roles and potential uses in bioremediation or other applications in microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. RAC03
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. RAC03 plasmid pBSY17_4, complete sequence.

Gene Summary

Adenine Count

9470 bp

Thymine Count

9669 bp

Guanine Count

15180 bp

Cytosine Count

15418 bp

Genome Length

49737 bp

Protein-coding Genes

49 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helicase-related proteinBSY17_RS15715Not AvailableNegative2298271 - 230098597883.9
m23 family metallopeptidaseBSY17_RS15720Not AvailablePositive2301258 - 230274253029.6
nucleotidyltransferase family proteinBSY17_RS15725Not AvailablePositive2302783 - 230357728073.5
lipopolysaccharide biosynthesis proteinBSY17_RS15730Not AvailableNegative2303671 - 230498446066.7
sugar phosphate nucleotidyltransferaseBSY17_RS15735Not AvailablePositive2305104 - 230587428546.2
dihydrolipoyl dehydrogenaseBSY17_RS15740Not AvailableNegative2306089 - 230748948569.7
giy-yig nuclease family proteinBSY17_RS15745Not AvailableNegative2307540 - 230780310505.6
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseBSY17_RS15750Not AvailableNegative2307880 - 230913343311.1
2-oxoglutarate dehydrogenase e1 componentBSY17_RS15755Not AvailableNegative2309142 - 2311937103056.0
succinate--coa ligase subunit alphaBSY17_RS15760Not AvailableNegative2312029 - 231291330073.5

Displaying genes 3191 – 3200 of 4203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.