Sphingobium sp. RAC03

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. RAC03 is a notable bacterium characterized by the presence of flagella, which suggests it has motility capabilities. This trait may enable it to navigate through various environments, potentially aiding in its ecological interactions and nutrient acquisition. The genomic structure of Sphingobium sp. RAC03 is complex, featuring a total of five replicons. This characteristic may imply a sophisticated level of genetic regulation and adaptability, as multiple replicons can enable the organism to carry diverse genetic information that may be advantageous in fluctuating environmental conditions. The strain has been cataloged with several accession numbers, including NZ_CP016454.1, NZ_CP016455.1, NZ_CP016456.1, NZ_CP016453.1, and NZ_CP016457.1. These accessions provide a basis for further research and allow for the exploration of its genomic features and potential applications in biotechnology or environmental microbiology. The combination of motility and complex genetic architecture may position Sphingobium sp. RAC03 as a versatile organism within its ecosystem. Its ability to move and adapt to different conditions could play a significant role in biogeochemical cycles, particularly in environments where it can interact with various substrates and microbial communities. Understanding these traits may contribute to insights into its ecological roles and potential uses in bioremediation or other applications in microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. RAC03
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. RAC03 plasmid pBSY17_4, complete sequence.

Gene Summary

Adenine Count

9470 bp

Thymine Count

9669 bp

Guanine Count

15180 bp

Cytosine Count

15418 bp

Genome Length

49737 bp

Protein-coding Genes

49 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBSY17_RS21570Not AvailablePositive1685103 - 16852405013.23
cytochrome c oxidase assembly proteinBSY17_RS12685Not AvailablePositive1685240 - 168581521285.5
cytochrome c oxidase subunit 3BSY17_RS12690Not AvailablePositive1685853 - 168668030748.6
surf1 family cytochrome oxidase biogenesis proteinBSY17_RS12695Not AvailablePositive1686766 - 168742523141.4
threonine synthaseBSY17_RS12700Not AvailablePositive1687470 - 168887050405.7
class i sam-dependent methyltransferaseBSY17_RS12705Not AvailablePositive1688963 - 168983232590.7
hypothetical proteinBSY17_RS12710Not AvailablePositive1689890 - 169044118993.0
3tm-type holinBSY17_RS12715Not AvailableNegative1690845 - 16911179778.9
glycoside hydrolase family 108 proteinBSY17_RS12720Not AvailableNegative1691128 - 169166719513.4
pas domain-containing proteinBSY17_RS12725Not AvailablePositive1691936 - 169252321431.9

Displaying genes 2571 – 2580 of 4203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.